PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.43ZG0
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 619aa    MW: 70703.5 Da    PI: 7.8516
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.43ZG0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.72.6e-2074165191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fYn+Y+   GF +rk+   +  ++g+i++r++vC+keg r+ +  + ++++r+ r+ trt+C a+l+vk+++    w+v+ +++ HnH+l+p
  Araip.43ZG0  74 QFYNAYSCWHGFVMRKDDVVRD-NQGRIISRQLVCNKEGWRNMRYLDlDDRSREARSLTRTKCPARLRVKLDYgCRGWKVSCFVESHNHDLTP 165
                  6****************99998.8888****************99887889999*******************9999*************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1874165IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.002283319IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-7294321IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.101.3E-5361368IPR001878Zinc finger, CCHC-type
SuperFamilySSF577561.59E-6421453IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.3E-5430450IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.614435450IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MSIKEDDVKN DSDNDLGDDF DYQPNAEDDA DDDDVDSLDS TSKSEEVCGV KRIADLMVED  60
IWNLEFRTED EACQFYNAYS CWHGFVMRKD DVVRDNQGRI ISRQLVCNKE GWRNMRYLDL  120
DDRSREARSL TRTKCPARLR VKLDYGCRGW KVSCFVESHN HDLTPPQFAH LVPANRRLTV  180
TDRVQVKNLH NFGVKSCHIM GALKEYRNNE LIADFKSQCS EPVMITSLEV YKRSASCYFT  240
RNIFKEIRNE IQRAGALNIT VLSTTLDKVE FSVTALGDPA KDRRVEVDRG KNLFSCSCKL  300
FESCGIPCSH ILCAMKFENI LEFPDSLIYK RWTKNAKNEF ISTEMPVNDD IERVLKFRVG  360
ALASNCNKLC DIACKDLADF DEVQSELVNL VIRLQSRKQG KSTPNVNVEG INDPFVVKSK  420
GAPSKRSSWR KKRACSNCHK YGHYYKRCPD LMQHSVEGNP RDQSYGNASA KDSGFSPERF  480
ANSSRSFSIK SEHHSGPNTK PFKKGGTRKF TATGMRNWKG KDNTFVERSL HESSESIDIA  540
STNGVFNKNL DSLTQQVKES QQDKRHSFTN YECNNDVIDN KCDTRHVQMD VRDQLPSSLP  600
CGNKQGSYMA LFVSMHRTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.43ZG0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192708.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445BN500.0A0A445BN50_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-20FAR1-related sequence 5