PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.445QM

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 136aa MW: 15921.5 Da PI: 9.6222

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.445QM	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.7	7.6e-13	20	59	52	91
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Araip.445QM 20 VRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 59 689**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-10	21	59	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MAVLHELQLI CLCCSGARIV RQRAETRVGC RAMILVRKVS SGKWVVTKFV KEHTHPLTPG 60 KGRRDCIYEQ YPNEHDKIRE LSQQLAIEKK RCAAYKRQLE LLFEHIEEHN NSLSKKIQHI 120 VGNVKEIEAE EQQRHR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.445QM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	9e-54	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016172169.1	2e-82	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025673067.1	2e-82	protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A444Y8K5	4e-81	A0A444Y8K5_ARAHY; Uncharacterized protein
STRING	XP_008222480.1	2e-72	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-60	FAR1 family protein