PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.44ZRM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 600aa    MW: 68765.6 Da    PI: 7.9664
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.44ZRMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.19e-2174165191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fYn+Y+   GF +rk+   +  ++g+i++r++vC+keg r+ +  + ++++r+ r+ t+t+C a+l+vk+++  g+w+v+ +++ HnH+l+p
  Araip.44ZRM  74 QFYNAYSCWYGFVMRKDDVVRD-NQGRIISRQLVCNKEGWRNMRYLDlDDRSREARSLTQTKCPARLRVKLDYgCGRWKVSCFVESHNHDLTP 165
                  6****************99998.8888****************99887889999*******************99***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-1974165IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.99265301IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-4276303IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.106.6E-6345350IPR001878Zinc finger, CCHC-type
SuperFamilySSF577562.03E-6404435IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.106.6E-6412432IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.746417432IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MSINEDDAKN DSDNDLGDNF DYQPNAEDDA EDDDVDSLDS TSKSEEVCGV KRIADLMVED  60
IWNLEFRTED EACQFYNAYS CWYGFVMRKD DVVRDNQGRI ISRQLVCNKE GWRNMRYLDL  120
DDRSREARSL TQTKCPARLR VKLDYGCGRW KVSCFVESHN HDLTPPQFVH LVPPIIVSLS  180
LIRALKEYRN NELIANFKSQ CSEPVMITSL EVYERFASCY FTRNIFKEIR NEIQRAGALN  240
IKVLSTTLDK VEFSMTALGD PAKDRRVEVD RGKNMFSCSC KLFKSRGIPC SHVFCAMKFE  300
NILEFPDLLI YKRWTKNAKN EFISTQMPVN DDVERVLKFR VVALASNCNK LCDIACKDVA  360
YFDKVQSELV NLIIHQQSRK QGNSTPNVNV EGINDPFVVK SKRAPSKRSS WKKKRACSNC  420
HKYGHYYKRC PELMQHSVEG NPRDRSDGNA SARDSGFSPE RFANSSRSFS VKSENHSGPK  480
TKPFKKAGTR KFTVTGMKNR KGKDNTFVER NLNESSESID IASMNGFFNK NLYSLTQVKE  540
SQEDKGHSFT NYECVNDVMD EKCDTPYVQI DVRDPSPSSM PCGNKQGSYM ALFASMHRTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.44ZRM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192007.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025638221.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445BN500.0A0A445BN50_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-17FAR1-related sequence 5