PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.45253
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 259aa    MW: 30103.5 Da    PI: 5.2011
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.45253genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-1826100147
                      TSSS-HHHHHHHHHHHHHTTTT.............................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.............................tWktIartmgkgRtlkqcksrwqky 47 
                      +g+WT+eEd ll+++vk +G g                              W+tIar ++ gRt++++k++w+++
      Araip.45253  26 KGPWTAEEDRLLIEYVKIHGEGrwnsvarlaeewkelqaemgelpetrpqeGWSTIARSLP-GRTDNEIKNYWRTH 100
                      79***********************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.08921105IPR017930Myb domain
SuperFamilySSF466895.62E-152497IPR009057Homeodomain-like
SMARTSM007171.1E-1425103IPR001005SANT/Myb domain
PfamPF002494.0E-1426100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-192788IPR009057Homeodomain-like
CDDcd001673.18E-1128101No hitNo description
Gene3DG3DSA:1.10.10.605.7E-489140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MYWGGNMGMG WGVMIEEEVG GGGWRKGPWT AEEDRLLIEY VKIHGEGRWN SVARLAEEWK  60
ELQAEMGELP ETRPQEGWST IARSLPGRTD NEIKNYWRTH FKKKVKNPSD AAEKAKNRLL  120
RRQQFQQQQQ LKQQQQQIQQ QQQQVQFNLD MKGIMMMNLL EMENHNNDHR RVPSISHQQE  180
PQDMYQQQSS TEEEHGYFYH PMFINNINGN NNDNYSPAAT ESSSEEILWD GLWNLDDVLG  240
NFTAASATSK PTTLVAPFC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.45253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016177380.11e-131transcription factor MYB59
RefseqXP_025679876.11e-131transcription factor MYB2
TrEMBLA0A444XRK71e-130A0A444XRK7_ARAHY; Uncharacterized protein
STRINGXP_007144143.13e-75(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.19e-38myb domain protein 79