PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.45RHI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 348aa    MW: 39962.2 Da    PI: 6.6911
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.45RHIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.93.5e-32891981100
                  EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                  f+k ltpsdv+k++rlv+pk++ae++          +  + ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F++++ +
  Araip.45RHI  89 FEKPLTPSDVGKLNRLVIPKQHAEKYfpltassateSATECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFERHRAD 186
                  99***************************9988876444448889************************************************98889 PP

                  EE..EEEEE-SS CS
           B3  89 efelvvkvfrks 100
                  +++l+++++r+s
  Araip.45RHI 187 SQRLFIRWRRRS 198
                  999******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4181199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-3184198IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-2887188No hitNo description
PROSITE profilePS5086313.74789198IPR003340B3 DNA binding domain
PfamPF023624.4E-2989198IPR003340B3 DNA binding domain
SMARTSM010192.7E-2689198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSINHYSSSP MDLQETTPLW WTQQPQPPSS YNNNIHNSQN TPRFNLNNEE TDTATTSQEG  60
DEEEEEENLP EPIQQDDNNN HQQHNERMFE KPLTPSDVGK LNRLVIPKQH AEKYFPLTAS  120
SATESATECK GLLLSFEDES GKCWRFRYSY WNSSQSYVLT KGWSRYVKDK RLDAGDVVSF  180
ERHRADSQRL FIRWRRRSSP LAQVSRTAHA GGADVNNDKS GVAWTSGFYC AHPPYPAHPL  240
HNQHLTYPQQ HEGSSSSLHA GSQGKNQRMR PVGNCSSSSS KVLRLFGVNM ECQTQHDDDD  300
SQPSTTKEGT SNSDTTHHFY HHNYYHQPSN NSHPNHNHML PHQQSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-50861975113B3 domain-containing transcription factor NGA1
5os9_B1e-50861975113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.45RHI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184727.10.0B3 domain-containing protein At2g36080-like isoform X1
SwissprotQ8RYD31e-63Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A445E7G21e-174A0A445E7G2_ARAHY; Uncharacterized protein
STRINGGLYMA10G08871.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.14e-66B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]