PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.46YUC

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ERF

Protein Properties

Length: 373aa MW: 40833.4 Da PI: 6.0878

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.46YUC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.3	4.3e-14	226	278	1	55
AP2 1 sgykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV ++++++grW A+I + +k +lg+f ++eeAa+a++ a+ k++g Araip.46YUC 226 SIYRGVtSRHHQQGRWQARIGRVAG---NKDLYLGTFASEEEAAEAYDIAAIKFRG 278 57***99******988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.00E-11	226	288	No hit	No description
Pfam	PF00847	2.6E-8	226	278	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-16	226	287	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	9.2E-18	227	287	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-28	227	292	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.887	227	286	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-5	228	239	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-5	268	288	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MHSHSLLSME TLTTSSSIYH HSLPPPPPPP HYYFLYANGT TDLKPEGLDG TSQLDHNIMP 60 QQPSFFVNPN LQPPQPLLPK LEYFFQTDTN DDDDSSSLTQ DLKALAADAA FLAFSSANSV 120 SQVLDAHSSR NDDFAFSASG GGSSSNSKKV VGDTFGQRTS IYRDTDGRDD TKLTCGIIAA 180 AERVKPGKAV KVSNYIKELE EMKDVGKLEF IASLRRRSSG FSRGASIYRG VTSRHHQQGR 240 WQARIGRVAG NKDLYLGTFA SEEEAAEAYD IAAIKFRGLN AVTNFETSRY NVEAIMNNSL 300 PVGGVAKRLR LSLESEKEEA ASTHTHQPPK TESESSIMTL STIPAPPAQF DSVTPYCYQF 360 HSPDAVNDAI MPM

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MHSHSLLSME TLTTSSSIYH HSLPPPPPPP HYYFLYANGT TDLKPEGLDG TSQLDHNIMP  60
QQPSFFVNPN LQPPQPLLPK LEYFFQTDTN DDDDSSSLTQ DLKALAADAA FLAFSSANSV  120
SQVLDAHSSR NDDFAFSASG GGSSSNSKKV VGDTFGQRTS IYRDTDGRDD TKLTCGIIAA  180
AERVKPGKAV KVSNYIKELE EMKDVGKLEF IASLRRRSSG FSRGASIYRG VTSRHHQQGR  240
WQARIGRVAG NKDLYLGTFA SEEEAAEAYD IAAIKFRGLN AVTNFETSRY NVEAIMNNSL  300
PVGGVAKRLR LSLESEKEEA ASTHTHQPPK TESESSIMTL STIPAPPAQF DSVTPYCYQF  360
HSPDAVNDAI MPM

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269\|PubMed:15454085, ECO:0000269\|PubMed:15635403, ECO:0000269\|PubMed:16424342, ECO:0000269\|PubMed:20190735}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.46YUC

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin accumulation. {ECO:0000269\|PubMed:15454085}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015956658.1	0.0	AP2-like ethylene-responsive transcription factor AIL7
Swissprot	Q5YGP7	1e-58	PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBL	A0A444ZVM8	0.0	A0A444ZVM8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23861	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	5e-40	AINTEGUMENTA-like 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lee DK,Sieburth LE The bps signal: embryonic arrest from an auxin-independent mechanism in bypass triple mutants. Plant Signal Behav, 2012. 7(6): p. 698-700 [PMID:22580686] Hong LW,Yan DW,Liu WC,Chen HG,Lu YT TIME FOR COFFEE controls root meristem size by changes in auxin accumulation in Arabidopsis. J. Exp. Bot., 2014. 65(1): p. 275-86 [PMID:24277277] Tian H,Jia Y,Niu T,Yu Q,Ding Z The key players of the primary root growth and development also function in lateral roots in Arabidopsis. Plant Cell Rep., 2014. 33(5): p. 745-53 [PMID:24504658] Zhao Q, et al. Sulfur nutrient availability regulates root elongation by affecting root indole-3-acetic acid levels and the stem cell niche. J Integr Plant Biol, 2014. 56(12): p. 1151-63 [PMID:24831283] Huang JB, et al. ROP3 GTPase contributes to polar auxin transport and auxin responses and is important for embryogenesis and seedling growth in Arabidopsis. Plant Cell, 2014. 26(9): p. 3501-18 [PMID:25217509] Yang S, et al. The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance. Plant Cell, 2015. 27(6): p. 1670-80 [PMID:25991732] Jia Y, et al. The Arabidopsis thaliana elongator complex subunit 2 epigenetically affects root development. J. Exp. Bot., 2015. 66(15): p. 4631-42 [PMID:25998905] Zhang M, et al. A tetratricopeptide repeat domain-containing protein SSR1 located in mitochondria is involved in root development and auxin polar transport in Arabidopsis. Plant J., 2015. 83(4): p. 582-99 [PMID:26072661] Shinohara H,Mori A,Yasue N,Sumida K,Matsubayashi Y Identification of three LRR-RKs involved in perception of root meristem growth factor in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(14): p. 3897-902 [PMID:27001831] Ou Y, et al. RGF1 INSENSITIVE 1 to 5, a group of LRR receptor-like kinases, are essential for the perception of root meristem growth factor 1 in Arabidopsis thaliana. Cell Res., 2016. 26(6): p. 686-98 [PMID:27229312] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis . J Integr Plant Biol, 2017. 59(1): p. 30-43 [PMID:28074634] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]