PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.4DM65
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 122aa    MW: 13839.5 Da    PI: 7.2913
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.4DM65genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.14.9e-1252116170
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++ 
  Araip.4DM65  52 KFYRDYAKAAGFSTRVRSTNRK--RNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIHT 116
                  6****************98887..5569***********99998776...8999************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-952116IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
IIDDSTSDCQ LNQGEVDFEF KSNEVHEPLC VVDDQFVPKV GMTFTTFEDA GKFYRDYAKA  60
AGFSTRVRST NRKRNEIKNQ LITCSREEKW KSKISPTEKT NPTAGLNCPA RIYIHTLKDV  120
GA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.4DM65
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-114HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020958614.13e-72uncharacterized protein LOC110262592
TrEMBLA0A444YPX91e-76A0A444YPX9_ARAHY; Uncharacterized protein
TrEMBLA0A445BA589e-76A0A445BA58_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.16e-07FAR1-related sequence 8