PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.4L5AH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 378aa    MW: 41306.3 Da    PI: 5.261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.4L5AHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-31180238259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+
  Araip.4L5AH 180 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRTDPTMFIVTYTAEHNHP 238
                  79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-30172240IPR003657WRKY domain
PROSITE profilePS5081134.635174240IPR003657WRKY domain
SuperFamilySSF1182907.59E-26177240IPR003657WRKY domain
SMARTSM007742.4E-36179239IPR003657WRKY domain
PfamPF031061.2E-25181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEMELDWDLH AVVRGCSTLT SSSSSSSSSS SSSSSGFGYF HSQASPSSVL DTEDQQQQQQ  60
GITNNVMSFS AASYSYPFGP RTAIEELHEL CKPFFTKSLP QQQQQQQQSL QASSPLSSFS  120
VAPPPPPPPP KPVHAQEKQQ RSNTNKHPHP GGDSVNTPRS KRRKNQLKRV CQVPVENLSS  180
DIWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CLARKQVERN RTDPTMFIVT YTAEHNHPAP  240
THRNSLAGST RQKPLTPQAA AATTTNGGES DEKALTPTKS ASPDISVAEE EALPQHCEKS  300
SVSREEKEED LADDDDDEFG LSDMVIPDDF FDSFDELKEI TGIDDDGIRG DNFFVDPFSA  360
IAMPSWVANS AATAAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-22165241380Disease resistance protein RRS1
5w3x_D3e-22165241380Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.4L5AH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932951e-92BT093295.1 Soybean clone JCVI-FLGm-17I1 unknown mRNA.
GenBankEU3753441e-92EU375344.1 Glycine max transcription factor (WRKY10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193961.10.0WRKY transcription factor 22
RefseqXP_025649535.10.0WRKY transcription factor 22
TrEMBLA0A444ZMS40.0A0A444ZMS4_ARAHY; Uncharacterized protein
STRINGGLYMA18G47300.11e-119(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-67WRKY family protein