PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.4Y3P3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 196aa    MW: 22457.3 Da    PI: 9.2137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.4Y3P3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l++ ++ +G ++Wkt a + g++R++k+c++rw++yl
      Araip.4Y3P3 19 RGAWTPEEDDKLARFIEIHGAKRWKTLAVKSGLKRCGKSCRLRWLNYL 66
                     89********************************************97 PP
2Myb_DNA-binding53.36.3e-1772117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
      Araip.4Y3P3  72 RGNITIEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNSHL 117
                      789999****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9821466IPR017930Myb domain
SuperFamilySSF466892.35E-2918113IPR009057Homeodomain-like
SMARTSM007171.4E-141868IPR001005SANT/Myb domain
PfamPF002493.6E-161966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-232073IPR009057Homeodomain-like
CDDcd001678.19E-112166No hitNo description
PROSITE profilePS5129425.7667121IPR017930Myb domain
SMARTSM007177.8E-1371119IPR001005SANT/Myb domain
PfamPF002495.0E-1572117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2574121IPR009057Homeodomain-like
CDDcd001671.27E-1078117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAPKNNKKST KISSVMMNRG AWTPEEDDKL ARFIEIHGAK RWKTLAVKSG LKRCGKSCRL  60
RWLNYLRPNI KRGNITIEEE DLILRLHKLL GNRWSLIAGR LPGRTDNEIK NHWNSHLCKK  120
VNPNAGEPST STAKESGATL NNMEDSKIML EHNRATNNGS DENLDINFDV NEFFDFSTEG  180
SFGFDWANKY LEFDES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-29161211105C-Myb DNA-Binding Domain
1msf_C1e-29161211105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.4Y3P3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016175211.11e-143transcription repressor MYB5-like
RefseqXP_025631033.11e-143transcription repressor MYB5
SwissprotQ388501e-51MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A445AS821e-142A0A445AS82_ARAHY; Uncharacterized protein
STRINGXP_004508935.11e-87(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-54myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]