PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.52BJT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 710aa    MW: 80007.4 Da    PI: 9.9444
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.52BJTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.43.7e-31615671158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep++VNaKQy++Il+RRq+Rak+e+e+k  +++rkpylheSRh+hAlrR+Rg+gGrF
  Araip.52BJT 615 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IRNRKPYLHESRHQHALRRARGCGGRF 671
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077972.5E-9192233IPR012438Protein of unknown function DUF1639
PfamPF077971.1E-13445496IPR012438Protein of unknown function DUF1639
SMARTSM005212.2E-35613674IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.698614674IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-26616671IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.0E-23617639IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860619639IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.0E-23648671IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MTKSPVSPDL PPPNLTATDE ETTRCNTANR PRKLIIKCGD RMIGCTTDKD VINANTTSHD  60
DSGTGRLEPT VNPKRRKKNN AEPKGYQSHT PWIPPSLPPT LLHDLTVTRE ELMHDFKTSL  120
DKIKQGNFSK EDNHKPLAPT PPVVTAAIAE RSPTGLKINE SICDDTAENV WKGRTRSRSC  180
NKKERPPFRF ALTESEIEED FMKMTMNKNW PPPKQKKQSR NLQKQLDVSF PSLPFKSLAT  240
PPHFLSRPAM KKPPVSPDLP PPNLRATADE TTRCNTANRP RKLIIKCGDR RIGCTTNKDA  300
ITATNTTGHD PGTELPQLPL EPTVNPKRRK KNNAEPKGYQ SHTPWIPPSL PPTLLHDLAV  360
TREELMHDFK ISSDKIRQGN FSREDNHKPL EPTPPMVTAA VAERSPNGLK INESICDGTA  420
ETVWKGRTRS RSCNKKERPP FRFALTESEI EEDFMKMTMG ENWSPRKQKK QPRNLQKQLD  480
DLVPGFRLTE VKANLYKIWT RFCMKRMTST HDVTDNEAGE KEQSESQMQS LSANGISDPG  540
AGMQNNQYVT PAPLGTGYAM APPPYPYPDP YYRSMFAPND TQPYPPQPYG GHPMAHIQLM  600
GIQQAGVPLP TNAIEEPVFV NAKQYHGILR RRQSRAKAES ENKAIRNRKP YLHESRHQHA  660
LRRARGCGGR FLNSKKDENQ QDELSPADKS HSNDNHNPDK NNLAPSDRAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-19614679166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.52BJT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020976381.11e-169uncharacterized protein LOC110270901
TrEMBLA0A444ZDQ81e-167A0A444ZDQ8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-45nuclear factor Y, subunit A7