PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5450Y
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 918aa    MW: 101616 Da    PI: 8.0044
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5450YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.1e-15332415181
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                  f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+ +
  Araip.5450Y 332 FEKVLSASDAGRIGRLVLPKACAEAYfpHISQSEGLPLRVQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTEI 415
                  99**************************555566778***************9989999999***9.***************855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-25328456IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-15330413IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-19330450No hitNo description
SMARTSM010197.2E-12332430IPR003340B3 DNA binding domain
PROSITE profilePS508639.46332430IPR003340B3 DNA binding domain
PfamPF023627.3E-12332413IPR003340B3 DNA binding domain
PROSITE profilePS5105014.401616666IPR011124Zinc finger, CW-type
PfamPF074967.9E-12621663IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MGSDICVNGS CCVHEWKKGW PLRSGGFAQL CIKCGFMEEW KREIIDTLSA NEYSLFCNNF  60
HRRDTGWKEC NFCNKPIHCG CIVSKSLFEY LDFGGVGCVS CVNASQLRLT RNTENGSVST  120
TKNNASDRHS AHIDNRQFVS SVDEGKLMEF CRIVEASESS RWNHAQRDNI ISCNGQNGKE  180
VTFREVESGF SNVIKPSVQS LTFSALENSR PTWEIKNRHE PMTQPSLNMC LGNPSGSNLV  240
LPSATEIAEG RLESKASNFQ QRSRPILPKP SKTGLTMNVE TDKGSTSQAR IARPPAEGRG  300
KNQLLPRYWP RITDQELERL SGDLKSTVVP LFEKVLSASD AGRIGRLVLP KACAEAYFPH  360
ISQSEGLPLR VQDVKGNEWT FQFRFWPNNN SRMYVLEGVT PCIQSMQLRA GDTEIYRANL  420
TLPVVLYDSL AAVTFSRIDP GGKLVMGFRR ATNSSDTQVD ASTSAQSNGI STTGTTSGGT  480
ENLPSGSNYA DLLQSAKGNG EPNSSGHPDH PRSGTGAAAV LKTENCEEMI NNHSLKQPIP  540
VSEKKRTRNI GPKSKRLLID NEDSMELRLT WEEAQDLLRP PPSVKPSIVT IEDQIFEEYD  600
EPPVFGKRTI FSACSSGGKE QWAQCDDCSK WRKLPVDALL PPKWNCSENV WDASRASCSA  660
PEEMSSRELE NLLRTNKDLK KRRIAENNKP IQEHEPSGLD ALASAAVLGD NLVDPVESSA  720
GATTRHPRHR PGCSCIVCIQ PPSGKGRHKP TCTCNVCMTV KRRFKTLMLR KKKRQSEREA  780
DAAQKGHIPR KDESDTNGRA SRDYPKPSHS DKEGGLNKDQ QPAHVGESNA GQIDLNSHPN  840
RDDMAADTSA PSTSNHLETT NREVRNYMNQ NGVRSYNNGE VQDNQHPSLL NQSNGGCFGS  900
SIVWKMERKD EGAQSGQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-643104582131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1760771KRRFKTLMLRKK
2760773KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5450Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1419233e-45AC141923.27 Medicago truncatula clone mth2-7f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015949087.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_015949092.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_015949101.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_025692072.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_025692076.10.0B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_025692081.10.0B3 domain-containing transcription repressor VAL1 isoform X1
TrEMBLA0A445AMD50.0A0A445AMD5_ARAHY; Uncharacterized protein
STRINGGLYMA11G31234.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2