PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.55LLV
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 246aa    MW: 28557.2 Da    PI: 6.7197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.55LLVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-141482161785
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 
                   +p +fa+++++  e++    l+ e+gr W+v ++ + ++g     y l+kGW +F + n+L+  D++vF+l 
  Araip.55LLV 148 AIPSNFARKYMK--EGG--YLLRVEDGRAWKVMFKTWSGDGVpykkYKLQKGWAKFSQGNKLQKDDVCVFELL 216
                  69********84..466..5666677********998888878888*************************54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-1410109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1214109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.61415110IPR003340B3 DNA binding domain
CDDcd100172.92E-915108No hitNo description
SMARTSM010190.003716110IPR003340B3 DNA binding domain
SMARTSM010190.2145224IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-13148219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-15148237IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-12148217IPR003340B3 DNA binding domain
CDDcd100176.71E-13149215No hitNo description
PROSITE profilePS5086310.659149239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAFNQQGEST NSVVSFFKII CRWHIRDEKI KLPTEFTNKY GLKLPNPVIL KVVNGNQKKV  60
HWTNINGSIW FIGKEWKEFL EHYSVSHGHL LLFKYCLDAS YFRVQIFDNT TLEIDYPSPE  120
LNYADYDDDD FDFDDDGDGD GDDDVMKAIP SNFARKYMKE GGYLLRVEDG RAWKVMFKTW  180
SGDGVPYKKY KLQKGWAKFS QGNKLQKDDV CVFELLYNHN SNGSSTTIPT FNVLIHRNHI  240
GSSYSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.55LLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025683122.11e-161B3 domain-containing transcription factor VRN1-like
TrEMBLA0A445B0U71e-138A0A445B0U7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1909224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-15B3 family protein