PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.56M91
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WOX
Protein Properties Length: 383aa    MW: 42939.1 Da    PI: 7.4616
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.56M91genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.4e-1852112257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Araip.56M91  52 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRMQLqeygQVGDANVFYWFQNRKSRSKH 112
                  89*****************99*************************************995 PP
2Wus_type_Homeobox112.22.7e-3651113264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+++L+eyG+++d+NVfyWFQNrk+R+++k
        Araip.56M91  51 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHK 113
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-740111IPR009057Homeodomain-like
SuperFamilySSF466893.51E-1246115IPR009057Homeodomain-like
PROSITE profilePS5007110.4348113IPR001356Homeobox domain
SMARTSM003891.9E-850117IPR001356Homeobox domain
CDDcd000861.75E-851113No hitNo description
PfamPF000462.0E-1552112IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNQF QHDMVSTTNA SCHRSAPYNP ISGCDEKSPE PKPRWNPKPE  60
QIRILEAIFN SGMVNPPRDE IRKIRMQLQE YGQVGDANVF YWFQNRKSRS KHKLRHLTNN  120
NNRNNNTPSP SPPPQPQFIS ATTNSSSSSS SDKSSPKFVP AFTDVVMLLP NSPTASVNQN  180
YFHHNETNNN NTINHLLVPP PLPIEPFFPV FHNSSGVVAT TEISNSVMNN HQPPHLVYQE  240
NVDPCTDLLL SEIMSHGGVE PSSKRYHEQD KAAATVKIRQ PQQYISFCPV STPPPSFTNT  300
TATPITVPSP FQAAKCTVYI NDMACEVDVG PFNVRHAFGD EAVLIDSSGH TVLTDDWGVT  360
LHPLQHGFSY YLIWFLSFFL SPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.56M91
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020975165.10.0WUSCHEL-related homeobox 9 isoform X2
TrEMBLA0A444ZWH60.0A0A444ZWH6_ARAHY; Uncharacterized protein
STRINGXP_007148089.11e-116(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-54homeobox-3