PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.572XZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 23221.5 Da    PI: 9.3174
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.572XZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.91.1e-221048240
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +i++
  Araip.572XZ 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVM 48
                 8************************************97 PP
2K-box72.41.3e-24671471292
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                  + a++ ++e+a L+++++ Lq+ +R+l+Ge+L+ L ++eLq+Le+qLe slk +R kK+++++++i+el +k  e++++n 
  Araip.572XZ  67 NPASEVKREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKVYEARSTNG 147
                  4467899******************************************************************99999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.27E-23159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.38150IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-27160IPR002100Transcription factor, MADS-box
CDDcd002655.94E-33262No hitNo description
PRINTSPR004041.6E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-201049IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.52469185IPR002487Transcription factor, K-box
PfamPF014862.1E-2270146IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIVMKS IIERYNKLKE  60
EHNQLMNPAS EVKREAASLR QQLQHLQECH RKLMGEELSG LGVQELQNLE NQLEMSLKGV  120
RMKKDQIFTD EIKELHQKVY EARSTNGENA ASNPPYTIGN GYDLLAPISL QLSQPETQYT  180
EPPAKAMKLG TDNYKEGANI LNQTQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.572XZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179715.11e-126MADS-box transcription factor 23
RefseqXP_025681009.11e-126MADS-box transcription factor 23 isoform X2
SwissprotQ9SZJ67e-62AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A444WXN01e-131A0A444WXN0_ARAHY; Uncharacterized protein
STRINGGLYMA13G32810.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-64AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]