PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.57I8A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 150aa    MW: 17488.2 Da    PI: 9.533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.57I8AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-1358143386
                  EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                  k+lt++dv +  r+++p +fa+     gg+  e+ + ++e  +   s+e+++  +k+++r y ++  Wk+Fvk ++Lk++D++vF++++
  Araip.57I8A  58 KTLTKHDVKAD-RVYIPYQFAKLLlesGGS--ENWKFVVEEsKITTSFEMNVLKSKGKEReYKIGPKWKDFVKIHKLKTRDSCVFEMVS 143
                  78877777665.7********666876544..33345554426669999999775555556*************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-1355144IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.69855150IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-1255144IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.006556150IPR003340B3 DNA binding domain
CDDcd100177.05E-1057149No hitNo description
PfamPF023623.9E-1258144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDKLWLNYFD VLDDVVSGIE DNGMHENMKS SLNNSKASTI QNRSMTKKRG YVVLYHCKTL  60
TKHDVKADRV YIPYQFAKLL LESGGSENWK FVVEESKITT SFEMNVLKSK GKEREYKIGP  120
KWKDFVKIHK LKTRDSCVFE MVSKDLSFCN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.57I8A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020995282.19e-78uncharacterized protein LOC110279727
TrEMBLA0A445D6292e-45A0A445D629_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3018522