PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.59WX5

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 167aa MW: 18808.2 Da PI: 8.0454

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.59WX5	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.1	4.6e-16	61	147	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 Y +YA+ +GF vrk + ++k+ + +r+ skegkr+e+ + +++r+++a trtgC+a++ v ++ +++w+v+kl+++Hn +l+p Araip.59WX5 61 LYVRYARCLGFGVRKGDTAREKDGT--QRRR---SKEGKRAEKYISsLSRKREHKALTRTGCEAMFAVYFDTkTSTWRVKKLVEKHNYDLVP 147 7**************99984444..3333...89999987657889999***********999889************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-14	61	147	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MDVDSEPLSS QDNVEDGMMI GVEENVNCTC DCGGSSSKCV SVTADDIINQ TFETTDAAYN 60 LYVRYARCLG FGVRKGDTAR EKDGTQRRRS KEGKRAEKYI SSLSRKREHK ALTRTGCEAM 120 FAVYFDTKTS TWRVKKLVEK HNYDLVPQCL VHLIPNHRGL TEAQKAQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.59WX5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020998497.1	1e-108	protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBL	A0A445B7E0	1e-104	A0A445B7E0_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17979	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-11	FAR1 family protein