PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.5AZ2K

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 1022aa MW: 113048 Da PI: 6.5004

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.5AZ2K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.3	1.3e-38	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++C++apyfp ++p++fa+vh++FGasn+ k+l++l++ +reda++sl++eAear++ PvyG+v++i lqq+l+q + +l ++k Araip.5AZ2K 7 PCAACKFLRRKCTQECIFAPYFPPDNPQRFACVHRVFGASNIGKILNDLSPCQREDAVTSLAFEAEARLDSPVYGCVRHIVILQQRLQQIQMDLLHAK 104 7*******************************************************************************************998888 PP DUF260 99 ee 100 +e Araip.5AZ2K 105 SE 106 76 PP
2	DUF260	96.5	2.7e-30	716	805	11	100
DUF260 11 kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 C+++C++apyfpa++p++f++vh++FGasnv k+l++lp+++reda++sl+++A+ar+r+PvyG++ ++ lqq l+q +a l+ +k+e Araip.5AZ2K 716 ICTPECIFAPYFPANNPERFECVHRVFGASNVGKILNELPPSQREDAVKSLAFQAKARLRNPVYGCTFQVSILQQLLRQRRAVLENAKRE 805 5*******************************************************************************9999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.237	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-38	7	103	IPR004883	Lateral organ boundaries, LOB
SuperFamily	SSF52540	9.56E-5	310	372	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	1.8E-8	318	402	IPR002182	NB-ARC
PRINTS	PR00364	5.1E-7	325	339	No hit	No description
SuperFamily	SSF52047	4.87E-15	543	710	No hit	No description
Gene3D	G3DSA:3.80.10.10	2.9E-13	548	707	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	5.1E-7	678	694	No hit	No description
PROSITE profile	PS50891	18.891	705	806	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-29	717	802	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043531	Molecular Function	ADP binding

Sequence ? help Back to Top
Protein Sequence Length: 1022 aa Download sequence Send to blast
MSSTNSPCAA CKFLRRKCTQ ECIFAPYFPP DNPQRFACVH RVFGASNIGK ILNDLSPCQR 60 EDAVTSLAFE AEARLDSPVY GCVRHIVILQ QRLQQIQMDL LHAKSELSAY INPQGIQGPF 120 SPHGIRGLPL YPQGKPPSSS AALFGPPYGP NVIQSLMPPS SVQHNGTMIA NADLDPEQRE 180 LLEAQQLAAQ QHDMMVRNYE HQHQQEYLRY NGATGIIEPV AAASPVSVVT ADGDGRGSGV 240 FAQMAAHSGA QGGELAPSLG LGTFDSGGTY HHQLQQQPPQ HGGVGENYVG LANRHHYPVE 300 AQFLLPSQQQ QPLESEDCKS IVRGCNGSPL ALKVIGGSLC HHPYEFWQTM KERLKSNKDL 360 DSHLQNCLDI VEDDKEKECF MDLGLFPEDQ RIRVPLLNDM WTELHELDED GVKAMNIIHS 420 LNSKNLANLI VTRKVATDVE MYYNNHFLMQ HDLLRELANH QSNQEPIEPR KRLAIDLTQN 480 GKNCPNWLVG QNQPGIISRM LSFLSVRGTQ QQQKQEQDTA PIMFVSTDET FTPDWYNMNP 540 DETEVLILNI HSNKYTFPDF IQKMRKLKVL IVTNQGFHPC ELNNFEVLGS LPCLKRISLE 600 KVSVPSLCKL RKCEICRIIC AFGSGIKISD ALPNLVELNI DYCMDMVELP SDFCNIMTMK 660 KLSITNCHKL SKLPPEIVML KNLEVLRLSS CSDLKEMPKS VGRLQQIWCL TSASCICTPE 720 CIFAPYFPAN NPERFECVHR VFGASNVGKI LNELPPSQRE DAVKSLAFQA KARLRNPVYG 780 CTFQVSILQQ LLRQRRAVLE NAKRELSAYI NPQAIQGPFN PQEKPLSSSP AHLGPSCCSN 840 IVQYSAHLNP FYDPNVVHSS VHLGLSDGPD DEPFFKPAIQ YNGSLGGGGA VPQADPGQQE 900 LLEAQQLAAA VAFREQQLRY NAAAGIEPVA AAAPYGGNVS GSGVFGHMGA PSGGQGGEMA 960 PCMGLGTFDS GESYHSQLQQ PPQHGVGGNY VLATQHHYPL EGHEKSVKLR EAAYWSWILN 1020 NQ

Sequence ? help Back to Top

Protein Sequence Length: 1022 aa Download sequence Send to blast

MSSTNSPCAA CKFLRRKCTQ ECIFAPYFPP DNPQRFACVH RVFGASNIGK ILNDLSPCQR  60
EDAVTSLAFE AEARLDSPVY GCVRHIVILQ QRLQQIQMDL LHAKSELSAY INPQGIQGPF  120
SPHGIRGLPL YPQGKPPSSS AALFGPPYGP NVIQSLMPPS SVQHNGTMIA NADLDPEQRE  180
LLEAQQLAAQ QHDMMVRNYE HQHQQEYLRY NGATGIIEPV AAASPVSVVT ADGDGRGSGV  240
FAQMAAHSGA QGGELAPSLG LGTFDSGGTY HHQLQQQPPQ HGGVGENYVG LANRHHYPVE  300
AQFLLPSQQQ QPLESEDCKS IVRGCNGSPL ALKVIGGSLC HHPYEFWQTM KERLKSNKDL  360
DSHLQNCLDI VEDDKEKECF MDLGLFPEDQ RIRVPLLNDM WTELHELDED GVKAMNIIHS  420
LNSKNLANLI VTRKVATDVE MYYNNHFLMQ HDLLRELANH QSNQEPIEPR KRLAIDLTQN  480
GKNCPNWLVG QNQPGIISRM LSFLSVRGTQ QQQKQEQDTA PIMFVSTDET FTPDWYNMNP  540
DETEVLILNI HSNKYTFPDF IQKMRKLKVL IVTNQGFHPC ELNNFEVLGS LPCLKRISLE  600
KVSVPSLCKL RKCEICRIIC AFGSGIKISD ALPNLVELNI DYCMDMVELP SDFCNIMTMK  660
KLSITNCHKL SKLPPEIVML KNLEVLRLSS CSDLKEMPKS VGRLQQIWCL TSASCICTPE  720
CIFAPYFPAN NPERFECVHR VFGASNVGKI LNELPPSQRE DAVKSLAFQA KARLRNPVYG  780
CTFQVSILQQ LLRQRRAVLE NAKRELSAYI NPQAIQGPFN PQEKPLSSSP AHLGPSCCSN  840
IVQYSAHLNP FYDPNVVHSS VHLGLSDGPD DEPFFKPAIQ YNGSLGGGGA VPQADPGQQE  900
LLEAQQLAAA VAFREQQLRY NAAAGIEPVA AAAPYGGNVS GSGVFGHMGA PSGGQGGEMA  960
PCMGLGTFDS GESYHSQLQQ PPQHGVGGNY VLATQHHYPL EGHEKSVKLR EAAYWSWILN  1020
NQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-39	4	809	8	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-39	4	809	8	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.5AZ2K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23337	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	7e-45	ASYMMETRIC LEAVES 2-like 1