PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5BD6C
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 433aa    MW: 50139.9 Da    PI: 6.0723
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5BD6CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.12.5e-22129223190
         FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fYneYA+  GFs+r+sk  +s     +gei ++ f Cs++g+r+ ++ +  e++  +r+ tr+gC a++kv+ ++ +g+w v+k+  eHnHe+ 
  Araip.5BD6C 129 DFYNEYAQIQGFSIRRSKVGRStkiGSEGEILWQIFICSRQGERDAKHIHrVERKMDPRPITRCGCGAQIKVHVDQsTGRWFVDKFCGEHNHEML 223
                  6****************9999966677999**************9998874677778*****************999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-20129223IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.138385421IPR007527Zinc finger, SWIM-type
SMARTSM005750.002396423IPR006564Zinc finger, PMZ-type
PfamPF044346.8E-6397421IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
EVFVSEEKHS CHKRCWAHFL KADGATERFP FEYISVIHNY SMEELVDKDQ ARGMEGSYTV  60
SSNIQQRPQV QVMTGETIGV DEEYAEYGED YEQQHEPGMI VDGIGSFNRI DFSSLTYEEM  120
RMFEFKTYDF YNEYAQIQGF SIRRSKVGRS TKIGSEGEIL WQIFICSRQG ERDAKHIHRV  180
ERKMDPRPIT RCGCGAQIKV HVDQSTGRWF VDKFCGEHNH EMLDARFRGL LRSHRVIKEG  240
DMHQINSMRK AEMRVPTIFR AFVTQCGGFE TVGFEIKDIY NAIENERRVG ASDAECALKY  300
LCCLKRNDAN IRELVADYRS VYGQPIVKSK LEALESYAAT VYTKEVFELF REVLLLSSNV  360
RVVSCKKTST CSLFEVTMYC RDQSWSVAWD EADDEFTCSC LRMESFGIPC VHMVGVFLYL  420
NITQLPVKTI CER
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5BD6C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445D6S41e-155A0A445D6S4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-19FAR1-related sequence 5