PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5E3CZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 185aa    MW: 20426 Da    PI: 8.4932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5E3CZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.5e-0655941155
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Araip.5E3CZ 55 IRKEKLGDRIAALQQLVAPF-----GKTDTASVLLEAIGYIKFLQ 94
                 57788999*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.7194493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-55498No hitNo description
SuperFamilySSF474594.58E-1154104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00645499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-958101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MQHSTTSIPS QHFTNNNNGM MVETKRSSST LMESSNASKK SRPQSSRSSC QHLKIRKEKL  60
GDRIAALQQL VAPFGKTDTA SVLLEAIGYI KFLQSQVEDL HHGLIVTYTT DTKCSIYEVI  120
KEPNQQRTHN EARARDNIMN SEAKHEDLRS RGLCLVPMSC MAYIAGDDGG GCGAWQQPPN  180
FGGPT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5E3CZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025607307.11e-101transcription factor bHLH110
SwissprotQ9SFZ36e-37BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A444YGF34e-86A0A444YGF3_ARAHY; Uncharacterized protein
STRINGPOPTR_0002s03380.14e-43(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-35bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]