PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5G12P
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 1074aa    MW: 120419 Da    PI: 6.3338
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5G12PgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.71.9e-2270171199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++
  Araip.5G12P  70 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKQQ 163
                  99*****************************954.4444.48************************************************..557888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l++++ r+
  Araip.5G12P 164 LLLGIKRA 171
                  89988775 PP
2Auxin_resp1262.5e-41196278183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaas++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++gvsdldpvrW+nS+Wr+L+
  Araip.5G12P 196 AAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPVRWKNSQWRNLQ 278
                  79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-4460199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-4162185IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-1969161No hitNo description
PROSITE profilePS5086312.11170172IPR003340B3 DNA binding domain
PfamPF023629.4E-2170171IPR003340B3 DNA binding domain
SMARTSM010195.4E-2370172IPR003340B3 DNA binding domain
PfamPF065073.3E-36196278IPR010525Auxin response factor
PfamPF023093.6E-99441033IPR033389AUX/IAA domain
PROSITE profilePS5174524.6559471040IPR000270PB1 domain
SuperFamilySSF542771.03E-89611025No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1074 aa     Download sequence    Send to blast
MQKEADFVPS YPNLPSKLIC MLHNVVLHAD PETDEVYAQM TLQPVNKYDK EAILASDMGL  60
KQNQQPTEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPAQEI VAKDLHDSTW  120
TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDE KQQLLLGIKR ANRQQPALSS  180
SVISSDSMHI GILAAAAHAA SNNSPFTIFY NPRASPSEFV IPLAKYNKAM YTQVSLGMRF  240
RMMFETEESG VRRYMGTITG VSDLDPVRWK NSQWRNLQVG WDESTAGERP SRVSIWDVEP  300
VVTPFYICPP RFVVDFAEDE SDIENAFKRA MPWLGDELGM KDASSSIFPG LSLVQWMSMQ  360
QQNNQFAAAQ SGFFPPSMLS SNTLHGNLNN NDQSKILNFQ APVLSAPNLQ FNKPNLPNQV  420
NQLQQSMTSW PQQLQQPQQQ QQQKLQSLLQ SPVNQLQPQQ QQQQRQQQLP EPQNLSQSQQ  480
QQPQLPQQRT QQLQQPQQQP PPPQQHQPQQ SCQQPIMNNR VVTSNQCVQV PQPVTYSQLQ  540
QQQLVSGSMP TQQSIQPANK NAMLMTSLPL DSQFQQPIDQ QTSLLQRQQQ QPTQLQQSPL  600
QFLQQSTSQR ALQQLQGTQM SQQNASEQQL QLQLLQKLQQ QQQQQQQQQL ISTSSPLLQS  660
QLLQQKNTHL ANQQLPQLPQ SQHQPQQLGN NSFPMEKLLN SNSFSSSSLM QSQQLSVNQP  720
TLNAQKSVIT SRAPSSLTDV DVPSCSTSPS TNTCQISPPN LMKRNQQAPT TFGGMSVVEP  780
TNNLVQELHN KSDMQIKHEL SGIKGPDQLK YKGTISDQLE ASSSGTSYCI DPGSIHQNFQ  840
LPNFCMDGDV QSHPRQNLPF ASNLDGLAAD TMLSRGYDSQ KDLQNLLANY GGAPRDIETE  900
LSTAAISSQS FGVPNMPFKP GCSSDIPMND AGVLNNGLWA NQTQRMRTYT KVQKCGSVGR  960
CIDVTRYKGY DELRHDLARM FGIEGQLEDP QRTEWKLVYV DHENDILLVG DDPWEEFVSC  1020
VQSIKILSSA EVQQMSLDGD LGQVPIPNQA CSGTEGGNAW RGQYDDNSAA SFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-147829996388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5G12P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189155.10.0auxin response factor 19 isoform X3
TrEMBLA0A445A1710.0A0A445A171_ARAHY; Auxin response factor
STRINGAES921670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19