PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5HG5J
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 251aa    MW: 29011.3 Da    PI: 9.8881
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5HG5JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.32.2e-12971741189
         FAR1  11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                   F v+k++s+k+   g+  ++ fvC keg r+++k++ + +  +r +tr +C  kl ++  k  +k e++++ +eHnH+l
  Araip.5HG5J  97 RFGVCKKYSNKN-AVGKNLSHSFVCAKEGVRKSDKRD-SLTVIPRLKTRSNCLVKLGIRYIKgIEKCEIHDFFSEHNHHL 174
                  599*****9999.666699***************999.9999********************99**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3304.8E-7152IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF031011.2E-798174IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
IFHHFVGYRE VRLVSKESKH RCRDPLILCF VDFTNPACAA TAMSALQVDV LRCNKRLLQT  60
HFDDNDSSPS TLRLSSVALR RDVQRFYYFL ECPKYGRFGV CKKYSNKNAV GKNLSHSFVC  120
AKEGVRKSDK RDSLTVIPRL KTRSNCLVKL GIRYIKGIEK CEIHDFFSEH NHHLHLPQTI  180
HMLACQRKVS QVQAQEIELA DDSGITQRAS FELMSRQVGE RENIGYTRLD QKNYLRTKRM  240
RSMAYGEAGS F
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5HG5J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986514.15e-85protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025616747.11e-84protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3PRH22e-58A0A2K3PRH2_TRIPR; Protein FAR1-related sequence 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-13FAR1-related sequence 5