PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5NT6K
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 481aa    MW: 55430.3 Da    PI: 10.0483
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5NT6KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.61.5e-161197191
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                 kfY++Y k +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C  ++ ++  k  g w ++k++l+H+H+++p
  Araip.5NT6K 11 KFYRNYTKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPTRIYIHTLKdVGAWIISKVVLDHSHPCCP 97
                 6****************98887..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-141197IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.087259295IPR007527Zinc finger, SWIM-type
PfamPF044345.7E-4259292IPR007527Zinc finger, SWIM-type
SMARTSM005756.3E-4270297IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MTFTTLEDAR KFYRNYTKAA GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN  60
PTAGLNCPTR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRLCVWVY  120
SADLYEDRHI WVPIYLDHHF WAGMRSTQRS ESMHSFFNKF ITRNSSLIQF VKQYDNCLGS  180
REQVERESDA ADFHTVIPCA TKSSIEAQFQ DVYTHQKFRK VQAQFRGKAN CITRLTNSAL  240
GYSVYEVGEQ VSSSIFNKFV VTYDLVEAEV KCQCLLFESR GILCHHALSV LSFERVSQVS  300
PRYILERWSK KVKRRHTHIK SSHDEPLLEP RSKRFDQLVF RSQNICEFAF KFEELTAILH  360
RAYDNVMVEM ESLKAKRKGT SSLSHEDANL ESVNELQSPP RIRTRGRPKN RLGSKLDKQI  420
ANATKKKKTK ALNELNLFDA ASVVHSNSSQ YQARVMNYQF RVPAAADNSL GVYLQNMGVK  480
A
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5NT6K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-35far-red elongated hypocotyls 3