PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5Z0QI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 879aa    MW: 98321.6 Da    PI: 6.6353
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5Z0QIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.53e-24127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++ +
  Araip.5Z0QI 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFI--WNEKNQ 220
                  99*****************************86555544..8************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Araip.5Z0QI 221 LLLGIRRA 228
                  9****997 PP
2Auxin_resp119.23.4e-39253336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPra++s+Fv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  Araip.5Z0QI 253 AAHAAATNSRFTIFYNPRACPSDFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.76E-22126227No hitNo description
SMARTSM010191.0E-24127229IPR003340B3 DNA binding domain
PfamPF023621.2E-22127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.056127229IPR003340B3 DNA binding domain
PfamPF065078.6E-34253336IPR010525Auxin response factor
SuperFamilySSF542778.34E-6767846No hitNo description
PfamPF023092.2E-6768860IPR033389AUX/IAA domain
PROSITE profilePS5174523.109771855IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MKLSSADFCP PPPEGEKRVL DSELWHACAG PLVSLPIVGS RVVYFPQGHS EQVAVSTNRE  60
VDAQIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ACPSDFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPSG LPSFYGMKED DFGINSSLMW LRDADRGLQS LNFQGTGVSP  420
WMQPRLDPSM LNLQTDLYQA MAATALQDMR TLDPTKQHPT SLIQFQQPQN FPNRTGALMQ  480
TPMLQPSQHQ QAFPNNQEIQ HPSQSQVQIQ NHLQQHLQNQ HLFNNQSHQQ QQPQLQQQQQ  540
QQHHQQQMVD HQEIPNVVST MSQFVSTPQS QSLPMQAISS LCHQQSFTDS NGTAAVSPLH  600
SILGSFPQDE TSHLVNLART SSWVPVQSSS AWPSKRVAVD PLVSSEASQC VLPQVDQLGQ  660
AHSTMSQNAI SLPPVPGREY SVEGSTDPQN HILFGVNIEN SSSLLMHHGM SSLKGVGSNT  720
HSSTVPIQSS NYLNTVGTDS SLNQGMTHSN GESGFLQPPE DGGRGNPPNK KTFVKVYKSG  780
TFGRSLDITR FTNYHELRSE LARMFGLEGE LEDPLRSGWQ LVVVDRENDV LLLGDDPWPE  840
FVNSVWCIKI LSPREVQQMA NNGICDDLPG HDDPRNLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611635747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5Z0QI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020975652.10.0auxin response factor 6
RefseqXP_025640041.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A445DLJ70.0A0A445DLJ7_ARAHY; Auxin response factor
STRINGGLYMA15G09750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]