PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.5Z63N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 476aa    MW: 55169.9 Da    PI: 10.0477
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.5Z63NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.12.2e-161195189
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                 kfY++YAk++GFs+r+++++++  ++ei+++   Cs+e k +++ +     ++t+++   +C a++ ++  k  g w ++k++l+H+H++
  Araip.5Z63N 11 KFYRNYAKTAGFSTRVRSTNRK--ENEIKNQLIICSRERKWKSKISP---IEKTNPTAGLNCPARIYLHTLKdVGAWIISKVVLDHSHSC 95
                 6****************98887..7779************9998776...999***************988879**************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-131196IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.124233269IPR007527Zinc finger, SWIM-type
PfamPF044341.7E-4241266IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4244271IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MTFTTLEDVG KFYRNYAKTA GFSTRVRSTN RKENEIKNQL IICSRERKWK SKISPIEKTN  60
PTAGLNCPAR IYLHTLKDVG AWIISKVVLD HSHSCYPSKA EMLKQHRELS MSIRRTIENN  120
EEAGMRSTQR SESMHSFFNK FITRNSSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  180
ATKSSIEAQF QDLEVQAQFR GKANYITRLT NSALGYSVYE VREQVSSSIF NKFVVTYNSV  240
AAEVKCQCLL FESRGILCRH ALSVLSFEQV SQVSPRYILE RWSKKVKRRH THIKSSHDEP  300
LLEPRSKRFD QLIFRSQNIC EFASESEELT VILHRAYDNV MAEMKSLKAK RKRTSSLSHE  360
DANLESINEL QSPPRIRTRG RPKNRLGSKL DKQITNATKK KKTKVLSECQ HPENLSDNMD  420
SITTRMAWTS ERFIPCLLAR DVKRPITTND VNGKQVQEGY EHWVVFHLEW LIVFRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.5Z63N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020993575.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445B3W80.0A0A445B3W8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.28e-25far-red elongated hypocotyls 3