PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.60IH6
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-other
Protein Properties Length: 457aa    MW: 50669.3 Da    PI: 6.2409
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.60IH6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-092683051954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  Araip.60IH6 268 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 305
                  665559******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075265.0E-11118201IPR006563POX domain
PROSITE profilePS5007112.39246309IPR001356Homeobox domain
SMARTSM003892.5E-9249313IPR001356Homeobox domain
CDDcd000861.43E-12249310No hitNo description
SuperFamilySSF466891.45E-17250317IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-28252315IPR009057Homeodomain-like
PfamPF059202.0E-17266305IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MYPNQAFSSG SYAEMLSGNP LLSHNYNNNG SVGAPNMVDP ACNSFVEGEQ NVHGQGLSLS  60
LGTSVPSFQY QYDGTASAAA ECMVSLSSGG FHESAKREGL YNSNNSDPCI QGSFSNGVLN  120
SHYLKAAQEL LDEIVGVRKA LLKQPGMEKQ EKFNNVIDGG SKDSDGKCNS QSLQNNVKPP  180
NELSAEERQS LLEKKTKLLT LWIRNTDSTV IRCRLWCGEQ EGIPRLRYVD QQLRQQKALQ  240
QLGVMRQAWR PQRGLPETSV SILRAWLFEH FLHPYPKDSE KIMLARQTGL TRNQVANWFI  300
NARVRLWKPM VEEMYKEEFG DSDNISCNIR SEGIVKSKRD DAQASDNKGE DDSQDNLATL  360
ADSVQQEGHF HKHASCSMDE NNNNGVYSCG SIMGCSTSPA AYDFAELGNF TSTMGGHVSL  420
ALELRNCERD GFGGMSDNDG IHKKRRNHNQ ECSTVAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-17255313563Homeobox protein Meis2
4xrm_B4e-17255313563Homeobox protein Meis2
4xrs_A3e-17255312158Homeobox protein Meis1
4xrs_B3e-17255312158Homeobox protein Meis1
5bng_A4e-17255313159Homeobox protein Meis2
5bng_B4e-17255313159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.60IH6
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016167637.20.0LOW QUALITY PROTEIN: BEL1-like homeodomain protein 3
SwissprotQ9FWS94e-70BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A445CC240.0A0A445CC24_ARAHY; Uncharacterized protein
STRINGGLYMA14G07710.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.18e-54BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]