PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.621Z6
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 429aa    MW: 48704.4 Da    PI: 9.6443
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.621Z6genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.32.5e-1351137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++Y k +GFs+r++ ++k+   +ei+++  +Cs+egk +++ +    +++t+++   +   ++ ++  k  g w ++k++l+H+H+++p
  Araip.621Z6  51 KFYRNYTKAAGFSTRVRCTNKK--GNEIKNQLITCSREGKWKSKISL---TEKTNPTAGLNYPTRIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6***************998877..8889**************99887...889999999999******988879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-1151137IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.555216252IPR007527Zinc finger, SWIM-type
SMARTSM005750.0086227254IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDHSTSNCQL NPGEVDYEFE SNEVPKPLLV VDDELVPKVG MTFTTLEDAG KFYRNYTKAA  60
GFSTRVRCTN KKGNEIKNQL ITCSREGKWK SKISLTEKTN PTAGLNYPTR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAAQFQDAY THQKFRKVQA  180
QFRGKANCIT RLTNSALGYS VYEVGEQVSS SIFNKFVVTY DSVAAEVKCQ CLLFESRGIL  240
CRHAPSVLSF EQVSQVSPRY ILERWSKKVK RRHTHIKSSH DEPLMELRSK RFDQLVFRSQ  300
NICEFASESE ELTAILHRAY DNVMAEMESL KVKRKGTSSL SHEDANLESV NELQSPPRIR  360
TRGRPKNRLG SKLDKQIANA TKKKKTKVLS EINLFDGASA VHSNSSQYQG HVMNYQFRVP  420
AAGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.621Z6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-178protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445E9M10.0A0A445E9M1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-16far-red elongated hypocotyls 3