PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.62IDN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 289aa    MW: 32831.6 Da    PI: 4.9999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.62IDNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18107156255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + +GVr+++ +grW+AeIrdp++   r+r +lg+++taeeAa  +++ + +l+g
  Araip.62IDN 107 KLRGVRQRP-WGRWAAEIRDPVK---RTRLWLGTYDTAEEAAMVYDREAIRLRG 156
                  679******.**********755...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.128107164IPR001471AP2/ERF domain
CDDcd000185.03E-32107163No hitNo description
SuperFamilySSF541717.19E-21107163IPR016177DNA-binding domain
PfamPF008471.9E-11107156IPR001471AP2/ERF domain
SMARTSM003809.9E-35107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-28108163IPR001471AP2/ERF domain
PRINTSPR003671.5E-9108119IPR001471AP2/ERF domain
PRINTSPR003671.5E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MCRKTVICKV REPGVGDTLN AETTPKVVRV SVMDPEITDS SSDEEEYQQY QGRSKVKHIV  60
NEIRILYPPS HNTTKVQRSK QQQQQNKGKK VVVAAMKAAS SSQEGRKLRG VRQRPWGRWA  120
AEIRDPVKRT RLWLGTYDTA EEAAMVYDRE AIRLRGSHAQ TNFLKPPKEE EYEQVFDTNN  180
MKNMPSPTSP TSVLLFQSDG SGSKVLGEDQ SEFRDESPSS YFQDALFLDS PSLDFCLSDF  240
ETPPPIFLDE TCLPHFIFSD SNFSDATIEQ SIELCNLDVD DYFCSHTPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22104163262ATERF1
3gcc_A4e-22104163262ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.62IDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205293.10.0ethylene-responsive transcription factor CRF4-like
RefseqXP_025662066.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLA0A444YKX80.0A0A444YKX8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-37cytokinin response factor 4