PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.62LNZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 508aa    MW: 58379.5 Da    PI: 9.6903
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.62LNZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.44.8e-1876162191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.62LNZ  76 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISL---TEKTNPTAGLNCPARIYIHTLKdIGAWIISKVVLDHSHPCCP 162
                  6****************98887..8889**************99887...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1576162IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDDSTSDCQQ NQGEVDYEFE SNEVPETLGC RSEFFWCIFA GSVGLSCCRS GLLSVVDDQF  60
VLKVGMTFTT LEDARKFYRN YAKAAGFSTR VRSTNRKGNE IKNQLITCSR EGKWKSKISL  120
TEKTNPTAGL NCPARIYIHT LKDIGAWIIS KVVLDHSHPC CPSKAEMLKQ HRKLSMSIHR  180
TIENNEKAIP IYLDHHFWAG MRSTQRSESM HSFFNKFITR NNSLIQFVKQ YDNWLRSREQ  240
AERESDAADF HTVILCATKS SIEAQFQDVY THQKFRKIQA QFRGKANCIT RLTNSALGYS  300
VYEVGEQVSS SIFNKFVVTY DSVAAEVKYQ CLLFESRGIL CRHALSVLSF ERVSQVSPRY  360
ILKRWSKKVK RRHTHIKSSH DEPLLEPRRK RFDQLVFRSQ NICEFASESE ELTAILHRAY  420
DNVMVEMESL KAKRKGISSL SHEDANLESI NELQSPPKIR TRGRPKNWLG SKLDKQIANA  480
TKKKKMKALN ELNLFDAASV VHSNSSQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369390KRRHTHIKSSHDEPLLEPRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.62LNZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445AF030.0A0A445AF03_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.27e-31far-red elongated hypocotyls 3