PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.669KS
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 127aa    MW: 14779.6 Da    PI: 9.721
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.669KSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP122.51.8e-3836113178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cq+++C adl+ ak+y+rrhkvCe h+kapvvlvsg++qrfCqqCs+fhel  fD++krsCr+rLa+hnerrrk+qa
  Araip.669KS  36 CCQADECLADLQAAKRYNRRHKVCERHAKAPVVLVSGTRQRFCQQCSKFHELALFDDNKRSCRERLASHNERRRKAQA 113
                  6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114129.54734111IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.2E-303498IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.81E-3535115IPR004333Transcription factor, SBP-box
PfamPF031102.7E-3137110IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
VHDERRRKQK ITIRLVYADG SSRWNSSSSC TALSYCCQAD ECLADLQAAK RYNRRHKVCE  60
RHAKAPVVLV SGTRQRFCQQ CSKFHELALF DDNKRSCRER LASHNERRRK AQAHHADLQP  120
QPESDIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3026110184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.669KS
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978505.11e-89squamosa promoter-binding-like protein 3 isoform X1
SwissprotQ6Z4611e-32SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A444WUS81e-86A0A444WUS8_ARAHY; Uncharacterized protein
STRINGevm.model.supercontig_6.3274e-36(Carica papaya)
STRINGGLYMA11G08905.12e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.25e-33squamosa promoter binding protein-like 4