PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6K0VA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 237aa    MW: 27321.1 Da    PI: 9.0558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6K0VAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++  G ++W++ ++  g+ R++k+c++rw +yl
      Araip.6K0VA 14 KGPWTPEEDQILINYINTNGHNNWRALPKQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding53.94.2e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
      Araip.6K0VA  67 RGNFTNEEEETILKLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.889961IPR017930Myb domain
SuperFamilySSF466892.64E-3011108IPR009057Homeodomain-like
SMARTSM007172.9E-141363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-251568IPR009057Homeodomain-like
CDDcd001671.25E-101661No hitNo description
PROSITE profilePS5129425.72862116IPR017930Myb domain
SMARTSM007173.9E-1566114IPR001005SANT/Myb domain
PfamPF002496.5E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2669116IPR009057Homeodomain-like
CDDcd001671.61E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRAPCCEKL GLKKGPWTPE EDQILINYIN TNGHNNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TNEEEETILK LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLPPQE  120
NNNIKSTKKP RPKQKKKLEI TKKSNKTSSK QKQEKEEEEP IKIGDRTMMS PNTQCSSSIL  180
SSDNSYDEDA RKFEDIEFGD LDLFHFPLLS SSASSVACDG MDSWYDFCTK SLELPQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6K0VA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183062.11e-168transcription factor MYB14
RefseqXP_025632437.11e-168transcription factor MYB14
SwissprotQ9SJX83e-76MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445AEY11e-166A0A445AEY1_ARAHY; Uncharacterized protein
STRINGGLYMA03G31980.15e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-76myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]