PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6N0ZN
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 228aa    MW: 25710.2 Da    PI: 10.1093
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6N0ZNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l + v++ G g+W+t +++ g+ R++k+c++rw +yl
      Araip.6N0ZN 19 KGPWSAEEDEILSKFVQKEGEGRWRTLPKRAGLQRCGKSCRLRWMNYL 66
                     79********************************************97 PP
2Myb_DNA-binding47.63.7e-1577117648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
      Araip.6N0ZN  77 PDEEDLILRLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTHL 117
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-231068IPR009057Homeodomain-like
PROSITE profilePS5129417.2541466IPR017930Myb domain
SuperFamilySSF466891.37E-2916113IPR009057Homeodomain-like
SMARTSM007171.9E-121868IPR001005SANT/Myb domain
PfamPF002497.7E-151966IPR001005SANT/Myb domain
CDDcd001671.24E-102166No hitNo description
PROSITE profilePS5129424.80467121IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2469122IPR009057Homeodomain-like
SMARTSM007171.3E-1371119IPR001005SANT/Myb domain
CDDcd001671.57E-1177117No hitNo description
PfamPF002495.3E-1477117IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSKSSATTTP CCSKVGIKKG PWSAEEDEIL SKFVQKEGEG RWRTLPKRAG LQRCGKSCRL  60
RWMNYLRPSV KRGQIAPDEE DLILRLHRLL GNRWALIAGR LPGRTDNEIK NYWNTHLSKK  120
LIKRGIDPRT HKPLITTNYS THVTTSNGGV FHHHDQHSNV TSSIIMPLQQ QPTMTVNPAS  180
EIGNVNNSKF DYAPIISADW EAEFSNALIN QQDGSSSSSP PNNFLMYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-27191214105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-261912158159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-261912158159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-27191214105C-Myb DNA-Binding Domain
1msf_C3e-27191214105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6N0ZN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016206930.11e-147transcription repressor MYB6-like
SwissprotQ388508e-79MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A445CSP51e-137A0A445CSP5_ARAHY; Uncharacterized protein
STRINGXP_010054687.17e-88(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-81myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]