PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6U8R9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 182aa    MW: 19783.5 Da    PI: 10.6945
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6U8R9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA283e-093352120
         GATA  1 CsnCgttkTplWRrgpdgnk 20
                 C+ Cgt+kTplWR gp g+k
  Araip.6U8R9 33 CADCGTSKTPLWRGGPAGPK 52
                 ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.3942750IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.6E-73152IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.5E-73352IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVDSTGKGSD SDDASPNSAA AGKSPTTEQK KTCADCGTSK TPLWRGGPAG PKVTPPPTPT  60
ASPFVIYQIS SWKVLILRFL HLNVMFLQSL CNACGIRSRK KKRAILGITR GTTTDDVKKG  120
KRSNTVANSN NNKFGDSFSF KKRWITMARQ RSNPAHSHRD KLGEEEQAAF LLMSLSYGSV  180
YA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6U8R9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197861.15e-97GATA transcription factor 16
RefseqXP_025630167.15e-97GATA transcription factor 16
TrEMBLA0A445AWJ91e-109A0A445AWJ9_ARAHY; Uncharacterized protein
STRINGXP_004508168.17e-45(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-26GATA transcription factor 16