PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6W0QH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 577aa    MW: 64236 Da    PI: 7.6333
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6W0QHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23136237199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF +   +++ 
  Araip.6W0QH 136 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRA--QNGD 229
                  89****************************986445444..8************************************************43..6777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Araip.6W0QH 230 LCVGIRRA 237
                  8****996 PP
2Auxin_resp107.81.2e-35271354183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a++ a ++ +FevvY+Pr s++eF+vk+++v+++++++++ GmRfkm fetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+
  Araip.6W0QH 271 AVNCAVNGRAFEVVYYPRGSSPEFCVKASSVRASMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQLSDPLHWPHSPWRLLQ 354
                  57788899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-38130245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29132236IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-22135236No hitNo description
SMARTSM010192.5E-21136238IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929136238IPR003340B3 DNA binding domain
PfamPF023622.1E-21136237IPR003340B3 DNA binding domain
PfamPF065076.0E-31271354IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MDRSRTRTTT SAIQTCLDSQ LWHACAGPMV QMPPLNTKVL YFPQGHAEHE QAHAHGRKPH  60
FAPTIKTPIP PFFPCTLTAI KYMAEPETDE VYVKITLTPL PQQHHLSDPE EHDHHCSSNH  120
NSFLDNNNNG EKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAE PPVQTIIAKD  180
VHGQCWKFRH IYRGTPRRHL LTTGWSNFVN HKKLVAGDSI VFLRAQNGDL CVGIRRAKKG  240
GIGAGTATNT NISTTNNVGY GGGECNCVGE AVNCAVNGRA FEVVYYPRGS SPEFCVKASS  300
VRASMQIQWC SGMRFKMPFE TEDSSRISWF MGTISSVQLS DPLHWPHSPW RLLQVVWDEP  360
DLLQNVKCVN PWLVELVSNV PNFHLSPFSP PRKKQRFLQD QPDFQLINQF PPASSFSTIQ  420
DHQGIQGARH AHQFGLAPQD FHILDGFPRL DHAAQHPHRP SFGIYNKNNS AATKNNNNLE  480
ISCLLSVGNP GQSFNKEESC SNETKAPHIL LFGKLIHTDQ QNHSSNSSNS VYEGTNSSLK  540
TSIENSSDDG GSPWFKNQHK NNDLVGTENI NILCMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-751737551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6W0QH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016177227.10.0auxin response factor 16 isoform X1
RefseqXP_025677698.10.0auxin response factor 16
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLA0A444XSQ00.0A0A444XSQ0_ARAHY; Auxin response factor
STRINGGLYMA10G35481.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-157auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]