PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.71J30

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

BBR-BPC

Protein Properties

Length: 303aa MW: 34141 Da PI: 10.4496

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.71J30	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	309	1.6e-94	1	303	1	301
GAGA_bind 1 mdddgsre.rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaernkalverdn 79 md++ +++ r+ yy+ ++ ++l +++++ s++aer+a+i e ++a+sek++a+a+rd a+ qrd+ala+r++al erdn Araip.71J30 1 MDSSQHENgRHNMdYYRgahslwnmdsqhrvKEpNALV--MNKKIRSIMAERQAAIlvLELEAAISEKNEALAARDLALRQRDEALAQRDNALKERDN 96 78888888888777998999999999877763336677..99***********998899999****************************** PP GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskk 176 +l+al+ ++ +g +v +g+k + ++ +++ + r+ + + +++ea+++++ k++++ ++ + k++k + k+kk +e+ ++ Araip.71J30 97 ALTALKSQNI-----FKSGDGVQRGSKRMRQTAC------SPKDISRRDVSP-MTAKVSEAVKSNQAKRMQD--KNVINSKVSKPHsKAKKMGEDLNR 180 998444.....3456677788888875544......333333333332.3334455444444444443..334444444444378888899999 PP GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274 + ++e+ + k+e++ +d++ln v++De+ +PvP+C+CtG++rqCYkWGnGGWqS+CCttt+SvyPLP+ +++r+aRi+grKmS+++f++lL++ a Araip.71J30 181 QAASEGI--KFKSEWDMQDVGLNLVAFDETIMPVPICTCTGVPRQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSGSVFTRLLSRFAL 276 9998886..6************************************************************************************ PP GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301 +G+dls+p+DLk++WA+HGtn+++ti+ Araip.71J30 277 QGHDLSTPLDLKNYWARHGTNRYITIK 303 ************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	6.5E-123	1	303	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.3E-90	10	303	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDSSQHENGR HNMDYYRGAH SLWNMDSQHR VKEPNALVMN KKIRSIMAER QAAILVLELE 60 AAISEKNEAL AARDLALRQR DEALAQRDNA LKERDNALTA LKSQNIFKSG DGVQRGSKRM 120 RQTACSPKDI SRRDVSPMTA KVSEAVKSNQ AKRMQDKNVI NSKVSKPHSK AKKMGEDLNR 180 QAASEGIKFK SEWDMQDVGL NLVAFDETIM PVPICTCTGV PRQCYKWGNG GWQSSCCTTT 240 LSVYPLPQLP NKRHARIGGR KMSGSVFTRL LSRFALQGHD LSTPLDLKNY WARHGTNRYI 300 TIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.71J30

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020974880.1	0.0	protein BASIC PENTACYSTEINE4-like isoform X3
Refseq	XP_025637484.1	0.0	protein BASIC PENTACYSTEINE4 isoform X1
Refseq	XP_025637485.1	0.0	protein BASIC PENTACYSTEINE4 isoform X1
Refseq	XP_025637486.1	0.0	protein BASIC PENTACYSTEINE4 isoform X1
Swissprot	Q8S8C6	1e-113	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A444ZYT1	0.0	A0A444ZYT1_ARAHY; Uncharacterized protein
STRING	GLYMA05G38430.5	1e-174	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6974	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	4e-98	basic pentacysteine 4