PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.763PP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 388aa    MW: 45136.3 Da    PI: 8.2161
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.763PPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.61.3e-1584170191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk + F +r+++++++   +ei+++  +Cs+egk +++ +    +++t+ +   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.763PP  84 KFYRNYAKAADFFTRVRSTNRK--GNEIKNQLITCSREGKWKSKISL---TEKTNLTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 170
                  6****************98887..8889**************99887...89999*************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-1384170IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186311347IPR007527Zinc finger, SWIM-type
PfamPF044349.2E-5313344IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4322349IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
FQICSFFFSR VFPPSSRSFF SPPFSLFELV LKIMDDSTSD CQLNQGEVDY EFESNEVPEP  60
LSVVDDQFVP KVGMTFTTLE DAEKFYRNYA KAADFFTRVR STNRKGNEIK NQLITCSREG  120
KWKSKISLTE KTNLTAGLNC PARIYIHTLK DVGAWIISKV VLDHSHPCCP SKAEMLKQHR  180
ELSMSIRRTI ENNEEADLYE DRHIWVLIYL DHHFWAGMRS TQRSKSIHSF FNKEQVERES  240
NAADFHTVIP CATKSSIEAQ FQDVYTHQKF REVQAQFRGK ANCITRLTNS ALGYSVYEVR  300
EQVFSLIFNK FVVTYDSVAA EVKCQCLLFE SRGILCRHAL SVLSFEQVSQ VSPRYILERW  360
SKKVKRQHTH IKSNHDEPLL EPRSKRFD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.763PP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981527.11e-117protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445AH200.0A0A445AH20_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-22far-red elongated hypocotyls 3