PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.76FEY
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 328aa    MW: 36975.3 Da    PI: 7.5347
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.76FEYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.2e-1670113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l++++++ +G++ W++Ia++++ gRt++++k++w++
      Araip.76FEY  70 RGNITLEEQLLILELHASWGNR-WSKIAQYLP-GRTDNEIKNYWRT 113
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-2150123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-105076IPR009057Homeodomain-like
PROSITE profilePS500904.3565164IPR017877Myb-like domain
PROSITE profilePS5129423.11965119IPR017930Myb domain
SMARTSM007172.5E-1469117IPR001005SANT/Myb domain
PfamPF002491.4E-1470113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-1877114IPR009057Homeodomain-like
CDDcd001671.46E-790113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTWTSEEVHG PSTKTLPSSI TLPIMAKVAG ILLPALPQFY LFFSLFIGLK RTGKSCRLRW  60
LNYLRPDVRR GNITLEEQLL ILELHASWGN RWSKIAQYLP GRTDNEIKNY WRTRVQKHAK  120
QLKCDVNSKQ FKDTMRFLWM PRLVERIQAA AATVTTAATA ATATSSNSPT LSATKSVAIN  180
NNNTTTAYNF DNLNNLEVHS GNIMNMSNNN FGYATPENSS TGTSSDSFVT QDYCNNNNNV  240
HVGNNNNNNN SDPSSDYYHQ QGNNNNQVSF MDCITSPSSM SLFPHQEMDF QAMELPNTPW  300
INNPSTFSNF WNDENMLLLQ NLGCGDNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-175111737103MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-175111737103C-Myb DNA-Binding Domain
1msf_C2e-175111737103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.76FEY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016196475.10.0transcription factor MYB108-like
TrEMBLA0A444ZEH70.0A0A444ZEH7_ARAHY; Uncharacterized protein
STRINGXP_007147396.14e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2871422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.19e-59myb domain protein 108