PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.77ISR
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 257aa    MW: 28926.3 Da    PI: 8.6772
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.77ISRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.81.8e-31108852129
          NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+  ++e+vg++ktLvfyk+rap+g kt W+mhe+rle
  Araip.77ISR  10 KLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPlTREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 88 
                  44678**************************************999999***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.5641106IPR003441NAC domain
SuperFamilySSF1019419.81E-398106IPR003441NAC domain
PfamPF023653.6E-151587IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRTLHTEVAK LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV LDPLTREVVG  60
MRKTLVFYKN RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKTD NSAKLSPQFM  120
YEATPSSLTL ASSSSSPPTN QTNCNNLHVI GYNQLPNFSS SSSPMAIHHN HHHHHHHQNQ  180
NGSSSLMNLL QFSTKENSTI TQLSPKGGGG GGGGDDGGYG FMWDMDLEEN SFHDGGVIAS  240
NLNDMRFEVD NNTMVML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-27910666165NO APICAL MERISTEM PROTEIN
1ut4_B3e-27910666165NO APICAL MERISTEM PROTEIN
1ut7_A3e-27910666165NO APICAL MERISTEM PROTEIN
1ut7_B3e-27910666165NO APICAL MERISTEM PROTEIN
3swm_A3e-27910669168NAC domain-containing protein 19
3swm_B3e-27910669168NAC domain-containing protein 19
3swm_C3e-27910669168NAC domain-containing protein 19
3swm_D3e-27910669168NAC domain-containing protein 19
3swp_A3e-27910669168NAC domain-containing protein 19
3swp_B3e-27910669168NAC domain-containing protein 19
3swp_C3e-27910669168NAC domain-containing protein 19
3swp_D3e-27910669168NAC domain-containing protein 19
4dul_A3e-27910666165NAC domain-containing protein 19
4dul_B3e-27910666165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.77ISR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183051.10.0protein CUP-SHAPED COTYLEDON 3
RefseqXP_025632451.10.0protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A445EG491e-143A0A445EG49_ARAHY; Uncharacterized protein
STRINGGLYMA13G18620.21e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-63NAC domain containing protein 74