PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.78XNL
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 486aa    MW: 55174.4 Da    PI: 10.0044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.78XNLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.2e-211664149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 k+ +n+sn qvtfskRr g++ KA+EL++LC+aeva+i+fs+ +k++ +
  Araip.78XNL 16 KKMSNESNLQVTFSKRRGGLFNKASELCTLCGAEVAIIVFSPGQKVFSF 64
                 5689*****************************************9987 PP
2SRF-TF61.87.8e-20270317249
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                  +i  ks  qvtfskRr g++KKA+EL++LC++e+ +++fs+ +k + +
  Araip.78XNL 270 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEITIVVFSPADKAFSF 317
                  57789999*********************************9886655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-31867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.193868IPR002100Transcription factor, MADS-box
CDDcd002658.16E-34977No hitNo description
SuperFamilySSF554552.35E-27990IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-181030IPR002100Transcription factor, MADS-box
PfamPF003194.3E-231864IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-183045IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-184566IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.918261321IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-28261320IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-25262344IPR002100Transcription factor, MADS-box
CDDcd002654.49E-29263330No hitNo description
PfamPF003194.1E-22270317IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSTARKSRGR QKIEMKKMSN ESNLQVTFSK RRGGLFNKAS ELCTLCGAEV AIIVFSPGQK  60
VFSFGHPSVQ TIIDRYLMHA SMHNSSGTMQ FIEAQRSASV CELNEQLTRI SNQLDVEKKR  120
SNELSRLQKT VMTQFWWALS IENMDKTQLN QLKAALEKLK KSVMYYAEKL HIQGIVANPP  180
QPLLGLPSSS DVVHHHQPPF PPPTTHHVPQ LFASHIRQPL MLNGENRLMH NPMFADWSML  240
HQHGFNINTG MGGFGNMGGF LGRQKIPIEK IPKKSHLQVT FSKRRSGLFK KASELCTLCG  300
VEITIVVFSP ADKAFSFGHP EVESIIDRYL VLNPPHESIS STQQLVEAHR NANVRDLNMQ  360
LTQLLNHLEM EKKRGEELDH VRKARQRQFW WESSTDDLGF HELIQLKASI EELKKNLAKH  420
VSKIIMMDQT NMDSRIIGVN SNNGLLNRYD HAFDSNKSDA AAFNVAPTLP PPNNNAYYMG  480
FRHGYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-15261345185Myocyte-specific enhancer factor 2B
1tqe_Q9e-15261345185Myocyte-specific enhancer factor 2B
1tqe_R9e-15261345185Myocyte-specific enhancer factor 2B
1tqe_S9e-15261345185Myocyte-specific enhancer factor 2B
6c9l_A9e-15261345185Myocyte-specific enhancer factor 2B
6c9l_B9e-15261345185Myocyte-specific enhancer factor 2B
6c9l_C9e-15261345185Myocyte-specific enhancer factor 2B
6c9l_D9e-15261345185Myocyte-specific enhancer factor 2B
6c9l_E9e-15261345185Myocyte-specific enhancer factor 2B
6c9l_F9e-15261345185Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.78XNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025617187.11e-176agamous-like MADS-box protein AGL62
SwissprotQ9FKK28e-51AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A445BFB61e-174A0A445BFB6_ARAHY; Uncharacterized protein
STRINGXP_004511261.11e-106(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-53AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]