PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.79LYX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WRKY
Protein Properties Length: 245aa    MW: 27513.2 Da    PI: 7.7054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.79LYXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.59.9e-121822103159
                  T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  31 gCpvkkkversaedpkvveitYegeHnhe 59 
                  +C+vkk+vers +dp++v++tYeg+Hnh+
  Araip.79LYX 182 KCNVKKRVERSYQDPSIVITTYEGQHNHH 210
                  8***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-8153181IPR003657WRKY domain
SuperFamilySSF1182902.48E-16160212IPR003657WRKY domain
PROSITE profilePS5081116.754163212IPR003657WRKY domain
SMARTSM007745.7E-16168211IPR003657WRKY domain
PfamPF031061.6E-7182210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-10182212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MANEDKDQFH FDPFYYNNHE LNQSNFPLFR MITTSSSSHH HQEGFIDNNT TSFTDCLLHG  60
NSMDYNTLSR AFDLSCSSPE VISSSIDENK NQLPSTVVGG DSTTLNSSVS SSSNEADASL  120
TEEDSSSKST KKHEKQPKGN NNNKPKKKEK KPREPRFAFM TKSEIDHLED GYRWRKYGQK  180
AKCNVKKRVE RSYQDPSIVI TTYEGQHNHH CPATLRGSAA SVFASSPSLF ASTSLIRPTI  240
APINH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-141612131078Probable WRKY transcription factor 4
2lex_A5e-141612131078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143150KPKKKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.79LYX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4244948e-34CU424494.2 Medicago truncatula chromosome 5 clone mth2-103o8, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165419.11e-143probable WRKY transcription factor 71
TrEMBLA0A445C3Q49e-95A0A445C3Q4_ARAHY; Uncharacterized protein
STRINGXP_006484858.16e-63(Citrus sinensis)
STRINGXP_006437166.16e-63(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-33WRKY DNA-binding protein 71