PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.7C4AI
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 315aa    MW: 35716.3 Da    PI: 6.1264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.7C4AIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-091351148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+++++ +G +       +++  R++k+c++rw +yl
      Araip.7C4AI 13 RGLWSPEEDEKLLRYITTHGHK-------RLQ--RCGKSCRLRWINYL 51
                     788*****************88.......887..************97 PP
2Myb_DNA-binding54.13.5e-1757100146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++
      Araip.7C4AI  57 RGSFTLEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 100
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-17554IPR009057Homeodomain-like
PROSITE profilePS5129411.478851IPR017930Myb domain
SuperFamilySSF466891.2E-241098IPR009057Homeodomain-like
SMARTSM007176.2E-71253IPR001005SANT/Myb domain
PfamPF002491.3E-71351IPR001005SANT/Myb domain
PROSITE profilePS5129425.92152106IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2655107IPR009057Homeodomain-like
SMARTSM007177.0E-1656104IPR001005SANT/Myb domain
PfamPF002492.2E-1557100IPR001005SANT/Myb domain
CDDcd001672.67E-115999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGHRCCTKQK IKRGLWSPEE DEKLLRYITT HGHKRLQRCG KSCRLRWINY LRPDLKRGSF  60
TLEEEQIIID IHRILGNRWA QIAKHLPGRT DNEVKNFWNS CIKKKLISQG LDPQTHTLLS  120
SHRRTTSSSS NFSNNNNDSF LIITSNMPNS ANNNAPIIET SQGLSSSSSS LPTNNQAQPS  180
VVQAPSSIVT SSDFYYEPSI IIENNNSTNS NVSNSIPSKN SLLWSSRTDH DAEDFRVQTL  240
EEGQGMQHSL HAADDDDNEI REANNIIEMN TNASLEGSNN DNNNNNFDFG LLESVLNSEF  300
MSHDINYMDE LAWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28131067108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.7C4AI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169394.20.0myb-related protein 330
RefseqXP_025674023.20.0myb-related protein 330
TrEMBLA0A444Y0T40.0A0A444Y0T4_ARAHY; Uncharacterized protein
STRINGXP_007149171.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-73myb domain protein 67