PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.7JR5V

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 131aa MW: 14926.9 Da PI: 4.9472

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.7JR5V	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.4	5.7e-14	51	131	1	85
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 kfY++YAk +GFs+r+++++++ ++ei+++ +C +e k +++ + +++t+ + +C a++ + k g w ++k++l H Araip.7JR5V 51 KFYKDYAKAAGFSTRVQSTNRK--ENEIKNQLITCIREEKWKSKISP---TEKTNLTAGLNCPARIYIYTLKdVGAWIISKVVLYH 131 6**************98887..7779*******99998776...8999*********9877769******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-11	51	131	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFQ SNEVPEPLCV VDDQFVLKVG MTFTTLEDAG KFYKDYAKAA 60 GFSTRVQSTN RKENEIKNQL ITCIREEKWK SKISPTEKTN LTAGLNCPAR IYIYTLKDVG 120 AWIISKVVLY H

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.7JR5V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-116	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020958614.1	3e-77	uncharacterized protein LOC110262592
TrEMBL	A0A444YPX9	1e-81	A0A444YPX9_ARAHY; Uncharacterized protein
TrEMBL	A0A444YSY6	1e-78	A0A444YSY6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	2e-07	FAR1-related sequence 4