PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.7K9N2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 292aa    MW: 31205.4 Da    PI: 9.7777
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.7K9N2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.71e-08107132227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ +  +  Ck+Gd+C+FaHg+
  Araip.7K9N2 107 KTRLCNKYNSSEGCKFGDKCHFAHGE 132
                  8***********************96 PP
2zf-CCCH32.11.9e-10259283126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C  f++ G C +G++C+FaHg
  Araip.7K9N2 259 FKTKICEKFSK-GSCTFGEKCHFAHG 283
                  69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.6763967IPR000571Zinc finger, CCCH-type
SMARTSM003562.43966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-54065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-74164IPR000571Zinc finger, CCCH-type
PfamPF146081.74764No hitNo description
SuperFamilySSF902292.49E-8103135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-14103135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507105133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016105132IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.78E-14160238IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.4E-15166237IPR004088K Homology domain, type 1
SMARTSM003226.5E-10166236IPR004087K Homology domain
PROSITE profilePS5008413.733167231IPR004088K Homology domain, type 1
PfamPF000134.8E-10169232IPR004088K Homology domain, type 1
CDDcd001057.45E-12171232No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-15256289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8258288IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6258284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549258285IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-8259283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDRKRGRHEH PFNGTGNGAS KKFRPPSASE MESFPTGLGS KLKPCTKFFS TSGCPFGEGC  60
HFLHYVPGGI KTVQMMNAGS NPALPQVSRT PPVPPSFPDG SSPPMVKTRL CNKYNSSEGC  120
KFGDKCHFAH GEWEIGKPTM PSYEDRQRIG GRVETPAHGA AAGFGASATA KISINASLAG  180
AVIGKNGINS KQICRVTGAK LSIREHDSDP NLKNIELEGS FDQIKQASSM VHELILNVSS  240
AAGPAKKNVT SYGPGSNNFK TKICEKFSKG SCTFGEKCHF AHGIEELRKS GM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.7K9N2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016175684.10.0zinc finger CCCH domain-containing protein 44
RefseqXP_025680055.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ7F8R01e-103C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A444XUN60.0A0A444XUN6_ARAHY; Uncharacterized protein
STRINGXP_004497409.11e-157(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-74C3H family protein