PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.7R20U

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 451aa MW: 51348 Da PI: 8.5175

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.7R20U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.3	2.5e-18	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ ++i+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.7R20U 51 KFYRNYAKAAGFSTRVRSTNRK--GNKIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6**************98887..777999*******998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-15	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.778	280	316	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEPLSV VDDQFVPKVG MTFTTLEDAG KFYRNYAKAA 60 GFSTRVRSTN RKGNKIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAGMRSTQR NESMHSFFNK 180 FITRNSSLIQ FVKQYDNCLR SREQAERESD AADFYTVIPC ATKSSIKAQF QDVYTHQKFR 240 KVQAQFRGKA NYITRLTNSA LGYSVYEVGE QVSSSIFNKF VVTYDSVAAE VKCQCLLVES 300 RGILCRHALS VLSFEQVSQV SPRYILGRWS KKVKRRHTHI KSSHDEPLLE PRSKRFDQLV 360 FCSQNICEFA SESEELTAIL HRAYDNFMAE MESLKAKKKE ISSLSQEDAN LESINLFDAA 420 SVVHSNSSQY QGHVMNYQFR VPAAGDNFLG V

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MDDSTSDCQL NQGEVDYEFE SNEVPEPLSV VDDQFVPKVG MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRSTN RKGNKIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAGMRSTQR NESMHSFFNK  180
FITRNSSLIQ FVKQYDNCLR SREQAERESD AADFYTVIPC ATKSSIKAQF QDVYTHQKFR  240
KVQAQFRGKA NYITRLTNSA LGYSVYEVGE QVSSSIFNKF VVTYDSVAAE VKCQCLLVES  300
RGILCRHALS VLSFEQVSQV SPRYILGRWS KKVKRRHTHI KSSHDEPLLE PRSKRFDQLV  360
FCSQNICEFA SESEELTAIL HRAYDNFMAE MESLKAKKKE ISSLSQEDAN LESINLFDAA  420
SVVHSNSSQY QGHVMNYQFR VPAAGDNFLG V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.7R20U

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A444YSY6	0.0	A0A444YSY6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-25	far-red elongated hypocotyls 3