PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.7U3HG
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family E2F/DP
Protein Properties Length: 323aa    MW: 35701.8 Da    PI: 5.04
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.7U3HGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.82.1e-24801531471
      E2F_TDP  14 lklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                   +++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Araip.7U3HG  80 KRVCEKVESkGRTTYNEVADELVAEfadpsnsvlapdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 153
                  479***9999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.4E-1106323IPR015648Transcription factor DP
SMARTSM013726.2E-2766153IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.4E-3980159IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.3E-2180153IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.29E-1880154IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144588.98E-41158261IPR014889Transcription factor DP, C-terminal
SMARTSM011385.2E-68160321IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.12E-42160277No hitNo description
PfamPF087813.8E-41161273IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGTQPEQPCP EEDDEEMLGH GATISSQSMS TSRSVGSPSS RSEQTMATPA SDSTFLRLNH  60
LDIHGDDAGS QGAVASKKKK RVCEKVESKG RTTYNEVADE LVAEFADPSN SVLAPDQQQY  120
DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSQS DIEELKTERL GIRNRIEKKA  180
AYLQELEEQY VGLQNLIKRN EQVCSSGNAP SGGVSLPFIL VQTRPHATVE VEISEDMQLV  240
HFDFNSTPFE LHDDNYVLKA MKFSERPQND NNVTPNVTDG GEGSSMSGLF HVQAPTTVSN  300
PPVRPPSSPP LPGILKARVK PEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-27811581893PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.7U3HG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187982.10.0transcription factor-like protein DPB
RefseqXP_025642933.10.0transcription factor-like protein DPB
RefseqXP_025642934.10.0transcription factor-like protein DPB
RefseqXP_025642936.10.0transcription factor-like protein DPB
RefseqXP_025642937.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-138DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A445A7090.0A0A445A709_ARAHY; Uncharacterized protein
STRINGXP_004505604.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.21e-131Transcription factor DP