PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.7UB2Y

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 363aa MW: 42143.9 Da PI: 9.847

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.7UB2Y	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.9	1e-15	27	111	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f +YAk+vGFs ++ +k +n++it + +vCs+ g+r+++ + ++t+++ + +Cka + vk++k+ +++++ ++ +HnH+++ Araip.7UB2Y 27 FHTNYAKRVGFSWNIRITKWD-QNRQITYQILVCSRAGYRRSKIDP---LKKTNPTFEQNCKAGIIVKRDKKIEYVLIFVNIQHNHTIS 111 899*******999987776.6777***********99877...9999*******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-13	27	112	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MESTSSNDEV VPNIGMAFSF VKDYETFHTN YAKRVGFSWN IRITKWDQNR QITYQILVCS 60 RAGYRRSKID PLKKTNPTFE QNCKAGIIVK RDKKIEYVLI FVNIQHNHTI SPSMAKTLRK 120 SRELSLHAKR IAEINDQVAT TAGGYDKLTF TQKDLQNHVA RSVRVIEEEG DAQSLMHLHD 180 NNWLAGLYKE RDRWVFIFLS NSFWAGMSST QRSETQQEYE LDAASFNTII PCATASAIEK 240 QFQKEYTHAK FNELQKEFRA KANCFSTKEH EEGYVVTYKV IEELENGDKM FDVTYKASFD 300 SSTSDSNGIL CRHSLSVLGL ERVKKLLNKY ILDRWKKTLK RKHSNIKCSH DQSKSFRARK 360 KTL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MESTSSNDEV VPNIGMAFSF VKDYETFHTN YAKRVGFSWN IRITKWDQNR QITYQILVCS  60
RAGYRRSKID PLKKTNPTFE QNCKAGIIVK RDKKIEYVLI FVNIQHNHTI SPSMAKTLRK  120
SRELSLHAKR IAEINDQVAT TAGGYDKLTF TQKDLQNHVA RSVRVIEEEG DAQSLMHLHD  180
NNWLAGLYKE RDRWVFIFLS NSFWAGMSST QRSETQQEYE LDAASFNTII PCATASAIEK  240
QFQKEYTHAK FNELQKEFRA KANCFSTKEH EEGYVVTYKV IEELENGDKM FDVTYKASFD  300
SSTSDSNGIL CRHSLSVLGL ERVKKLLNKY ILDRWKKTLK RKHSNIKCSH DQSKSFRARK  360
KTL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.7UB2Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016185480.1	6e-87	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025635859.1	6e-87	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445A588	0.0	A0A445A588_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	5e-19	FAR1-related sequence 6