PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.80D5A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 493aa    MW: 56160.6 Da    PI: 8.7377
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.80D5AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.84.5e-1060140291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  fY++YAk +          ++++ +ei+++  +Cs+e k +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.80D5A  60 FYRNYAKAAD-------RCTNRKGNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 140
                  6666666542.......33345667899999******999998776...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-771140IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186280316IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-4282313IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4291318IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEVYYI RHDWPLSVVD DELVPKVGMT FTTLEDAGKF  60
YRNYAKAADR CTNRKGNEIK NQLITCSREE KWKSKISPTE KTNPTAGLNC PARIYIHTLK  120
DVGAWIISKV VLDHSHPCCP SKAEMLKQHR ELSMSIRRTI ENNEEATHKG ARACNHFFNK  180
YITRNSSLIQ FVKQYDNCLG SREQAEKELD AADFHTVIPC ATKSSIEAQF QDAYTHAKFR  240
EVQAQFRGKA NCITRLKNSA LGYSVYEVGE QVSSSIFNKF VVTYDSVAAE VKCQCLLFES  300
RGILCRHALS VLSFEQVSQV SPRYILERWS KKVKKRHTHI KSSHDEPLME PRSKRFDQLV  360
FRSQNICKFA SESEELTAIL HRAYDNVMAE MEALKAKRKE TSSLSHEEAN LESVNELQSP  420
PRIRTRGRPK NRLGSKLEKQ IANATKKKKT KVLSEINLFD AASAAHSNSC QYQGHVMNYQ  480
FRVPAAGDNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.80D5A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-25far-red elongated hypocotyls 3