PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.80H4B
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family AP2
Protein Properties Length: 213aa    MW: 24480.7 Da    PI: 8.3178
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.80H4BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.34.9e-104282136
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkf 36
                 s y+GV++++++gr++A+++d  ++n    k+ ++++lg++
  Araip.80H4B 42 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGTY 82
                 57*******************999955656446*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-64282IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-54282IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-44382IPR001471AP2/ERF domain
SMARTSM003800.007243110IPR001471AP2/ERF domain
PROSITE profilePS5103210.1254382IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGKASQVNKN NNHNLSVING STTKVKRTRR SVPRDSPPQR SSIYRGVTRH RWTGRYEAHL  60
WDKNCWNESQ NKKGRQVYLG TYMIYIMLSM LIKLHKKKLP LPMTWLLLNT VDLTPSPISI  120
SAARPGATSA LELLLQSSKF KEMMEMTSSV ANNNNPSTPA ECSDELPQCN FPEDIQTYFE  180
YEDSNKYEGG DHDTLFNEIH SFVPMFHCDD FEN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.80H4B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016173101.13e-60AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_025630643.13e-60AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A445AVD06e-59A0A445AVD0_ARAHY; Uncharacterized protein
STRINGGorai.012G098200.13e-37(Gossypium raimondii)
STRINGXP_010051046.14e-37(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.17e-32ARIA-interacting double AP2 domain protein