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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Araip.86VYR |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 338aa MW: 37919.4 Da PI: 9.9251 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Araip.86VYR | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 309.4 | 1.2e-94 | 64 | 338 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
mddd + n+gyyep +lglqlm +++rd+k+ r+ + l ++++a+++rd +++ rd+++++ ++++++++
Araip.86VYR 64 MDDDMLNMTNWGYYEPF--KGGHLGLQLMPGMTDRDTKPfmpgRDPTM-LVNTNGAFHPRDcvvseaqmpINY-VRDSWISQ--------RDRFFNMQ 149
899977779******98..4579******************9888888.9***********777777766666.67777777........789***** PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+++ + + vl++t+ + + q+++++ r+e+ +++ + ++e + +k++ r +++pk+kk +k+k+k ++++
Araip.86VYR 150 PTNPN--------YPVLPETSAAPT-------QITQPPDTSRDEKADIVEE--TVQKEGVQPRKRQGRVASTTPKAKKPRKPKDK-------SNAPV- 222
*6554........889999999883.......3344444433333222233..23344445555556667788888888888883.......34444. PP
GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
+ + ++ k+i++v+ng+++D+s+lP+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+LekLaaeGy+++n
Araip.86VYR 223 -Q-RSKPMKTIEFVINGIDMDISSLPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSTYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFGN 318
.2.3457899**************************************************************************************** PP
GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
p+DL++hWA+HGtnkfvtir
Araip.86VYR 319 PIDLRNHWARHGTNKFVTIR 338
*******************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
FGDSLSSIRT LSLLSLSLSL SLSFRFLSLS SFSLQQGPNP KEPFAPTKDH RDLQIVSFHL 60
CVVMDDDMLN MTNWGYYEPF KGGHLGLQLM PGMTDRDTKP FMPGRDPTML VNTNGAFHPR 120
DCVVSEAQMP INYVRDSWIS QRDRFFNMQP TNPNYPVLPE TSAAPTQITQ PPDTSRDEKA 180
DIVEETVQKE GVQPRKRQGR VASTTPKAKK PRKPKDKSNA PVQRSKPMKT IEFVINGIDM 240
DISSLPIPVC SCTGTPQQCY RWGCGGWQSA CCTTNVSTYP LPMSMKRRGA RIAGRKMSQG 300
AFKKVLEKLA AEGYNFGNPI DLRNHWARHG TNKFVTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ099143 | 3e-71 | DQ099143.1 Arachis hypogaea clone AH2TC7E04 microsatellite sequence. |
