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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.88THY | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 131aa MW: 15371.9 Da PI: 9.8662 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 27.6 | 9.5e-09 | 11 | 75 | 1 | 70 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70
kfYn+Y+k vGFs+++++++ + +ei+++ +C++e k +++ + + +t+++ ++C ++ +
Araip.88THY 11 KFYNDYSKLVGFSTKIRNTTWK--GDEIKNQLITCTREEKWKSKISL---TLKTNPSAGINCPTRIYIIS 75
6***************987776..888************99998877...89999*******99998865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 5.8E-6 | 11 | 76 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 131 aa Download sequence Send to blast |
MTFKTLEEAG KFYNDYSKLV GFSTKIRNTT WKGDEIKNQL ITCTREEKWK SKISLTLKTN 60 PSAGINCPTR IYIISKVVMN YSHLCCPDRV EMLKQHMELS MFVHRTIENN EEARIRPSKI 120 YQSFVRAIIM N |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.88THY |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016206076.1 | 9e-62 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A444YRU6 | 2e-65 | A0A444YRU6_ARAHY; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF21 | 14 | 477 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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