PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.8BB4D

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WOX

Protein Properties

Length: 379aa MW: 41560.5 Da PI: 8.7961

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.8BB4D	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.3e-17	43	102	2	56
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k Araip.8BB4D 43 KPRWNPKPEQIRILESIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRTK 102 89***************99***********************************99 PP
2	Wus_type_Homeobox	111.6	4.3e-36	42	104	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R ++k Araip.8BB4D 42 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRTKHK 104 689**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.4E-9	18	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.59E-12	39	107	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.544	39	104	IPR001356	Homeobox domain
SMART	SM00389	6.7E-8	41	108	IPR001356	Homeobox domain
CDD	cd00086	5.98E-8	42	104	No hit	No description
Pfam	PF00046	3.3E-15	43	103	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MFKSKPTWQH DITITATSSS SSSTSSSSRT SPYSCDDRSP EPKPRWNPKP EQIRILESIF 60 NSGMVNPPRD EIRKIRAQLQ EYGQVGDANV FYWFQNRKSR TKHKLRHLHT KNNPPPPPPP 120 SSTSSSSSDK SSSPPTTTTT TTSAATTNTY FYTHNHTATI PPPPPPPHVA AETFIFPLQH 180 HQGNSTTTTI TSSPQGLFFS ELSNVVQAHH HQPSPPPPHQ LMMHNVVGPC TSLLLSEIMM 240 NNASKKDHHQ EHASSNKSLK LMHHGGGHHH TPKLSFCVTP PTTTTATLVP PTTTPSLLTQ 300 DAVGTGDGSE KITVFINDVA FEVAAGPFNV REAFGEDAVL IHAITGQPLL TNQWGLTLHS 360 LHHGASYYLL LHTLPHAPY

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MFKSKPTWQH DITITATSSS SSSTSSSSRT SPYSCDDRSP EPKPRWNPKP EQIRILESIF  60
NSGMVNPPRD EIRKIRAQLQ EYGQVGDANV FYWFQNRKSR TKHKLRHLHT KNNPPPPPPP  120
SSTSSSSSDK SSSPPTTTTT TTSAATTNTY FYTHNHTATI PPPPPPPHVA AETFIFPLQH  180
HQGNSTTTTI TSSPQGLFFS ELSNVVQAHH HQPSPPPPHQ LMMHNVVGPC TSLLLSEIMM  240
NNASKKDHHQ EHASSNKSLK LMHHGGGHHH TPKLSFCVTP PTTTTATLVP PTTTPSLLTQ  300
DAVGTGDGSE KITVFINDVA FEVAAGPFNV REAFGEDAVL IHAITGQPLL TNQWGLTLHS  360
LHHGASYYLL LHTLPHAPY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.8BB4D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177677.1	0.0	WUSCHEL-related homeobox 9-like
Refseq	XP_025682781.1	0.0	WUSCHEL-related homeobox 9 isoform X1
Refseq	XP_025682782.1	0.0	WUSCHEL-related homeobox 9 isoform X2
TrEMBL	A0A445BBQ1	0.0	A0A445BBQ1_ARAHY; Uncharacterized protein
STRING	XP_007148089.1	1e-110	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	3e-47	homeobox-3